Plant Circular RNA Database

Detail information of Os03g0153000_circ_igg.1

			
						 General Information
					
						CircRNA Name
						Os03g0153000_circ_igg.1
					
						ID in PlantcircBase
						osa_circ_017990
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 2924659-2927630  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							igg-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Os03g0153000_circ_igg.2 Os03g0153000_circ_ig.1 Os03g0153000_circ_ig.2 Os03g0153000_circ_ig.3 EPlOSAG00000028990_circ_ig.1 EPlOSAG00000028990_circ_ig.2 EPlOSAG00000028990_circ_ig.3 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os03g0153000_circ_igg.1
ID in PlantcircBase	osa_circ_017990
Alias	NA
Organism	Oryza sativa
Position	chr3: 2924659-2927630 JBrowse»
Reference genome	IRGSP-1.0.38
Type	igg-circRNA
Identification method	CIRCexplorer
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Os03g0153000_circ_igg.2 Os03g0153000_circ_ig.1 Os03g0153000_circ_ig.2 Os03g0153000_circ_ig.3 EPlOSAG00000028990_circ_ig.1 EPlOSAG00000028990_circ_ig.2 EPlOSAG00000028990_circ_ig.3
Support reads	1
Tissues	shoot
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGCCTCTGATGGCTTAACCATCACCTGTTGACCAAGAAGCAGCTGGCCAGAAAGAGCTATTGCC
ATTGGTACAGACATAACATCATAGAATTCGATGTACttgtccacaaaaatgtgttttacttggc
caaacttggagcattcttcttggacatcatctttgatatccaaatcaaaatcagggtccgtctg
caataaag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							TTGTCCACAAAAATGTGTTTTACTTGGCCAAACTTGGAGCATTCTTCTTGGACATCATCTTTGA
TATCCAAATCAAAATCAGGGTCCGTCTGCAATAAAGTAAGTTTCAATTAGTTTTTAATCAACCA
AACAGAAAGGATACAGACCAGTAAAGATTTTTTTTAAAAAAGGTATGGACTGTTGGTGAACCCA
AAAAAAAAAAGAATGCAGTAGTAAGAACAAACCTCCACGGATGGATCAAACATATTTTTAAGCA
ATAGGCATTCACTGGGTGGGGCTGTCTCAATGGCTTGGGTAGTAATTGGAAGAGACACCCCAGG
AACTGAACCAAGACCAGGCACTGTAGGCAGTACAGATGCAGCGACTGGAGGAGCACCAAGAACT
GATGCAGGTGGTAATCCAACAGAAGTGTTCAAACCAGTACCGGCTATCCCAGCAGTCAAACTGC
AGACAGACAAAAGGAAGGTAAAAAATTCAGAGGAAGGCCAAGTGTTCAAACCAGTACCAACTAT
TTGTAGTTAATATATGCCACGCACATTTTTTGAATTGGAAATGCAGTGAAAAATTAAAAGGTTA
TGGCTAACATGTCTTGTCACGATAACTTGATGATACCATAAGAATAATAAGGTACTGTGGCATG
TTCTCGGCATTTCTCAATCATGGTTCACTCTCTTGAAATTTGTAGTAGTCAATGCGATTGACAT
TTGATGTTAGAAATGGAGTAAACAAAATATTAACAATAGCGATGTACACCAAAGAATTGGAAGA
GGTCCTTGGAGAATGACCTTGACAAGCTATATACATATGGAAACAGTGTTGATGTAGTGGTGGA
TGAATCCTGACGATAATATAGTAAAGGTCAATAACGAATGATTTTGATACAAATGACAGCAACT
CTAACAAGCAAGATAATTGACGTTCTGGACATTTGACATCCCAGTATTCTAAATATGAACTTAA
GGCTCTGCAGTACCATCAACAAATTACAGAAATTACCTGGTTGACTGAGCAACACACTATTAAA
CAAGCTACTACCTCCATCCCAAAATATAAGGGATTCTATAGTACTACTTGTGCCATCAAACGAG
CTAACCCCTAACCAACCTCCCGTCCATACCACATTTAAAGAGGGGTATCATGGTCTTTTTTTTC
TTCCTATTTATACTACCTCTGTTTTAATAGATGACCCTGTTGACTTTTGGTATAATTAGTGTAA
ATATGCCTATAAGTCATACTTAAAGATTTCTTTAATGATAAAACATGTCACAACAAAATAAATG
ACATTTTTATATAATTTTTTTCAACATGGCCAAACATCATGCCAAAAGTCAACGGTGTCATCTA
TTAAAAAACAGAGGGAGTATTTATGGGACAAAGGTTATATGTAAGATTGAATATGACTGATGTA
GTTAGATTGACATGGCCACGAGGGCACCAAAAAGATAGTTTAACCCATTAAGCTCACATATATA
TACCTGGTGGTAACGCCGCTACGGTCTAATTTCTGCATCAAAAGAGCTCTTGAACTAGCATTCA
GTGCCTGCATACATCAGCATTCAGCAAAGTCATCACAGACACAATTGAGATACTGTTGCAATAT
GCATAAGTATGTGGCATTTAAAAACAGCCTCAAACATTAACCAACTAAGAATGAACAAATGACC
ATGCAATAAAGGCTTGCTATAGTAGATATGCTAGGTATGCAGAGTGCTCAGTGTATACTAAACC
ATCATATGGTAAAGTTCTTGCACATTACTCCCTCCTTCCCAAATTGATCATCATATAATGAAAT
TCAAAATTTCCCAAATTGATCATCATATAACCACATGAACATGGATTTCATCGGAATACAATTA
ATGCAGCAAGGGAGAATGTGTGCATGCTAAGGGTGTAATTGGCATGGTGTTTTAATCAATGCAT
GCGCTGTGGGAGAATGTGTGCATGATGTCTTGATTGATGTGAATTAAATTATCATTGGTTTTGG
TGCATATGCATATATGGTGATCAATTTGGGATGGAGGGAGTAAAATCTTCTCTAAAAAGATTGA
GGCGAGGTGCAAGCAAAAGCATGCTATGTCCCAAGTAATTGTACTTAAAAGAAAATGAGGATAT
ATATATCAAATATGATAAGTGAATTTCCAGTTCTCGATGTGTCTCCAGAAATGGCACCCACCAA
ACCTCCACCTTCATCATCATCCAAATCTCCAGTAGTTACTCCACTGACTTGAACTCCTGCTTGG
TCTGTCACAGCAGAAACCTGGTTACAGCAGTTTAGCATAGTGTCAGGCAGAACCCTTATATTTG
AGATGTATAGCTTGAAAACAACATGTATTCTAGTAAATCTGAAGAAAACACTTGCCTTAATCAC
ACGTCCAGCTATATCAAGTTGCCCATTTAAACTCTGAGCAGCCTTTGCATCTTCAAGGCGTGCA
AACTACATGATGAAACAGAAGTCAGCCACACAGAACTCTCCACAAAAACAAAAGAATTGCTTAA
TAAGCAAACACTTGCCTGAACAAAACCAAAACCTTTACATAACCCAGTAAGTGGATCTAGTGGC
AATTGGACAAGCTCCACCTGACCAAACGGTTCGAAGACCTGGTAAAGAGAATTCATTAAACTCT
ATATATGCATAACAAGGATGCCATAGTAATTCTTCTACCCCATAAAAGTAATATGTTTTCCATT
ATGAACTCCAAGGGAAATTTTCTTCCAAAAGCACAGCCAACTCATCTAAAAAACAATTTGTCGG
CATCACCTGTCTCAATTGATCTTCAGTAATATTTGAGTGAAGATTTCCAACATACAACTTTCTT
GCCCCACCTGAAGCTGCTCCACTTGAAGAAGCATTTGACTGAACTAAATTCTTTTCAGCCTCTG
ATGGCTTAACCATCACCTGTTGACCAAGAAGCAGCTGGCCAGAAAGAGCTATTGCCATTGGTAC
AGACATAACATCATAGAATTCGATGTAC
						
					

			
		

Sequences
Splice junction sequence	AGCCTCTGATGGCTTAACCATCACCTGTTGACCAAGAAGCAGCTGGCCAGAAAGAGCTATTGCC ATTGGTACAGACATAACATCATAGAATTCGATGTACttgtccacaaaaatgtgttttacttggc caaacttggagcattcttcttggacatcatctttgatatccaaatcaaaatcagggtccgtctg caataaag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TTGTCCACAAAAATGTGTTTTACTTGGCCAAACTTGGAGCATTCTTCTTGGACATCATCTTTGA TATCCAAATCAAAATCAGGGTCCGTCTGCAATAAAGTAAGTTTCAATTAGTTTTTAATCAACCA AACAGAAAGGATACAGACCAGTAAAGATTTTTTTTAAAAAAGGTATGGACTGTTGGTGAACCCA AAAAAAAAAAGAATGCAGTAGTAAGAACAAACCTCCACGGATGGATCAAACATATTTTTAAGCA ATAGGCATTCACTGGGTGGGGCTGTCTCAATGGCTTGGGTAGTAATTGGAAGAGACACCCCAGG AACTGAACCAAGACCAGGCACTGTAGGCAGTACAGATGCAGCGACTGGAGGAGCACCAAGAACT GATGCAGGTGGTAATCCAACAGAAGTGTTCAAACCAGTACCGGCTATCCCAGCAGTCAAACTGC AGACAGACAAAAGGAAGGTAAAAAATTCAGAGGAAGGCCAAGTGTTCAAACCAGTACCAACTAT TTGTAGTTAATATATGCCACGCACATTTTTTGAATTGGAAATGCAGTGAAAAATTAAAAGGTTA TGGCTAACATGTCTTGTCACGATAACTTGATGATACCATAAGAATAATAAGGTACTGTGGCATG TTCTCGGCATTTCTCAATCATGGTTCACTCTCTTGAAATTTGTAGTAGTCAATGCGATTGACAT TTGATGTTAGAAATGGAGTAAACAAAATATTAACAATAGCGATGTACACCAAAGAATTGGAAGA GGTCCTTGGAGAATGACCTTGACAAGCTATATACATATGGAAACAGTGTTGATGTAGTGGTGGA TGAATCCTGACGATAATATAGTAAAGGTCAATAACGAATGATTTTGATACAAATGACAGCAACT CTAACAAGCAAGATAATTGACGTTCTGGACATTTGACATCCCAGTATTCTAAATATGAACTTAA GGCTCTGCAGTACCATCAACAAATTACAGAAATTACCTGGTTGACTGAGCAACACACTATTAAA CAAGCTACTACCTCCATCCCAAAATATAAGGGATTCTATAGTACTACTTGTGCCATCAAACGAG CTAACCCCTAACCAACCTCCCGTCCATACCACATTTAAAGAGGGGTATCATGGTCTTTTTTTTC TTCCTATTTATACTACCTCTGTTTTAATAGATGACCCTGTTGACTTTTGGTATAATTAGTGTAA ATATGCCTATAAGTCATACTTAAAGATTTCTTTAATGATAAAACATGTCACAACAAAATAAATG ACATTTTTATATAATTTTTTTCAACATGGCCAAACATCATGCCAAAAGTCAACGGTGTCATCTA TTAAAAAACAGAGGGAGTATTTATGGGACAAAGGTTATATGTAAGATTGAATATGACTGATGTA GTTAGATTGACATGGCCACGAGGGCACCAAAAAGATAGTTTAACCCATTAAGCTCACATATATA TACCTGGTGGTAACGCCGCTACGGTCTAATTTCTGCATCAAAAGAGCTCTTGAACTAGCATTCA GTGCCTGCATACATCAGCATTCAGCAAAGTCATCACAGACACAATTGAGATACTGTTGCAATAT GCATAAGTATGTGGCATTTAAAAACAGCCTCAAACATTAACCAACTAAGAATGAACAAATGACC ATGCAATAAAGGCTTGCTATAGTAGATATGCTAGGTATGCAGAGTGCTCAGTGTATACTAAACC ATCATATGGTAAAGTTCTTGCACATTACTCCCTCCTTCCCAAATTGATCATCATATAATGAAAT TCAAAATTTCCCAAATTGATCATCATATAACCACATGAACATGGATTTCATCGGAATACAATTA ATGCAGCAAGGGAGAATGTGTGCATGCTAAGGGTGTAATTGGCATGGTGTTTTAATCAATGCAT GCGCTGTGGGAGAATGTGTGCATGATGTCTTGATTGATGTGAATTAAATTATCATTGGTTTTGG TGCATATGCATATATGGTGATCAATTTGGGATGGAGGGAGTAAAATCTTCTCTAAAAAGATTGA GGCGAGGTGCAAGCAAAAGCATGCTATGTCCCAAGTAATTGTACTTAAAAGAAAATGAGGATAT ATATATCAAATATGATAAGTGAATTTCCAGTTCTCGATGTGTCTCCAGAAATGGCACCCACCAA ACCTCCACCTTCATCATCATCCAAATCTCCAGTAGTTACTCCACTGACTTGAACTCCTGCTTGG TCTGTCACAGCAGAAACCTGGTTACAGCAGTTTAGCATAGTGTCAGGCAGAACCCTTATATTTG AGATGTATAGCTTGAAAACAACATGTATTCTAGTAAATCTGAAGAAAACACTTGCCTTAATCAC ACGTCCAGCTATATCAAGTTGCCCATTTAAACTCTGAGCAGCCTTTGCATCTTCAAGGCGTGCA AACTACATGATGAAACAGAAGTCAGCCACACAGAACTCTCCACAAAAACAAAAGAATTGCTTAA TAAGCAAACACTTGCCTGAACAAAACCAAAACCTTTACATAACCCAGTAAGTGGATCTAGTGGC AATTGGACAAGCTCCACCTGACCAAACGGTTCGAAGACCTGGTAAAGAGAATTCATTAAACTCT ATATATGCATAACAAGGATGCCATAGTAATTCTTCTACCCCATAAAAGTAATATGTTTTCCATT ATGAACTCCAAGGGAAATTTTCTTCCAAAAGCACAGCCAACTCATCTAAAAAACAATTTGTCGG CATCACCTGTCTCAATTGATCTTCAGTAATATTTGAGTGAAGATTTCCAACATACAACTTTCTT GCCCCACCTGAAGCTGCTCCACTTGAAGAAGCATTTGACTGAACTAAATTCTTTTCAGCCTCTG ATGGCTTAACCATCACCTGTTGACCAAGAAGCAGCTGGCCAGAAAGAGCTATTGCCATTGGTAC AGACATAACATCATAGAATTCGATGTAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_013556 						
					
						PMCS
						0.108759449

Conservation Information
Conserved circRNAs	osi_circ_013556
PMCS	0.108759449

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0153000_circ_igg.1

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