Detail information of Os03g0153000_circ_igg.2


General Information
CircRNA Name Os03g0153000_circ_igg.2
ID in PlantcircBase osa_circ_017991
Alias NA
Organism Oryza sativa
Position chr3: 2924659-2929328  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0153000_circ_igg.1 Os03g0153000_circ_ig.1 Os03g0153000_circ_ig.2 Os03g0153000_circ_ig.3 EPlOSAG00000028990_circ_ig.1 EPlOSAG00000028990_circ_ig.2 EPlOSAG00000028990_circ_ig.3
Support reads 1
Tissues shoot
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAATTCAAATGTTACACTAAAATGCACCTGGTAGGCAAATACTGTCCTTTGATCTCGTTCTGGA
TCTGCTTCAGGCTCTCCAGCCTCTTCTTTCCTACGTttgtccacaaaaatgtgttttacttggc
caaacttggagcattcttcttggacatcatctttgatatccaaatcaaaatcagggtccgtctg
caataaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGTCCACAAAAATGTGTTTTACTTGGCCAAACTTGGAGCATTCTTCTTGGACATCATCTTTGA
TATCCAAATCAAAATCAGGGTCCGTCTGCAATAAAGTAAGTTTCAATTAGTTTTTAATCAACCA
AACAGAAAGGATACAGACCAGTAAAGATTTTTTTTAAAAAAGGTATGGACTGTTGGTGAACCCA
AAAAAAAAAAGAATGCAGTAGTAAGAACAAACCTCCACGGATGGATCAAACATATTTTTAAGCA
ATAGGCATTCACTGGGTGGGGCTGTCTCAATGGCTTGGGTAGTAATTGGAAGAGACACCCCAGG
AACTGAACCAAGACCAGGCACTGTAGGCAGTACAGATGCAGCGACTGGAGGAGCACCAAGAACT
GATGCAGGTGGTAATCCAACAGAAGTGTTCAAACCAGTACCGGCTATCCCAGCAGTCAAACTGC
AGACAGACAAAAGGAAGGTAAAAAATTCAGAGGAAGGCCAAGTGTTCAAACCAGTACCAACTAT
TTGTAGTTAATATATGCCACGCACATTTTTTGAATTGGAAATGCAGTGAAAAATTAAAAGGTTA
TGGCTAACATGTCTTGTCACGATAACTTGATGATACCATAAGAATAATAAGGTACTGTGGCATG
TTCTCGGCATTTCTCAATCATGGTTCACTCTCTTGAAATTTGTAGTAGTCAATGCGATTGACAT
TTGATGTTAGAAATGGAGTAAACAAAATATTAACAATAGCGATGTACACCAAAGAATTGGAAGA
GGTCCTTGGAGAATGACCTTGACAAGCTATATACATATGGAAACAGTGTTGATGTAGTGGTGGA
TGAATCCTGACGATAATATAGTAAAGGTCAATAACGAATGATTTTGATACAAATGACAGCAACT
CTAACAAGCAAGATAATTGACGTTCTGGACATTTGACATCCCAGTATTCTAAATATGAACTTAA
GGCTCTGCAGTACCATCAACAAATTACAGAAATTACCTGGTTGACTGAGCAACACACTATTAAA
CAAGCTACTACCTCCATCCCAAAATATAAGGGATTCTATAGTACTACTTGTGCCATCAAACGAG
CTAACCCCTAACCAACCTCCCGTCCATACCACATTTAAAGAGGGGTATCATGGTCTTTTTTTTC
TTCCTATTTATACTACCTCTGTTTTAATAGATGACCCTGTTGACTTTTGGTATAATTAGTGTAA
ATATGCCTATAAGTCATACTTAAAGATTTCTTTAATGATAAAACATGTCACAACAAAATAAATG
ACATTTTTATATAATTTTTTTCAACATGGCCAAACATCATGCCAAAAGTCAACGGTGTCATCTA
TTAAAAAACAGAGGGAGTATTTATGGGACAAAGGTTATATGTAAGATTGAATATGACTGATGTA
GTTAGATTGACATGGCCACGAGGGCACCAAAAAGATAGTTTAACCCATTAAGCTCACATATATA
TACCTGGTGGTAACGCCGCTACGGTCTAATTTCTGCATCAAAAGAGCTCTTGAACTAGCATTCA
GTGCCTGCATACATCAGCATTCAGCAAAGTCATCACAGACACAATTGAGATACTGTTGCAATAT
GCATAAGTATGTGGCATTTAAAAACAGCCTCAAACATTAACCAACTAAGAATGAACAAATGACC
ATGCAATAAAGGCTTGCTATAGTAGATATGCTAGGTATGCAGAGTGCTCAGTGTATACTAAACC
ATCATATGGTAAAGTTCTTGCACATTACTCCCTCCTTCCCAAATTGATCATCATATAATGAAAT
TCAAAATTTCCCAAATTGATCATCATATAACCACATGAACATGGATTTCATCGGAATACAATTA
ATGCAGCAAGGGAGAATGTGTGCATGCTAAGGGTGTAATTGGCATGGTGTTTTAATCAATGCAT
GCGCTGTGGGAGAATGTGTGCATGATGTCTTGATTGATGTGAATTAAATTATCATTGGTTTTGG
TGCATATGCATATATGGTGATCAATTTGGGATGGAGGGAGTAAAATCTTCTCTAAAAAGATTGA
GGCGAGGTGCAAGCAAAAGCATGCTATGTCCCAAGTAATTGTACTTAAAAGAAAATGAGGATAT
ATATATCAAATATGATAAGTGAATTTCCAGTTCTCGATGTGTCTCCAGAAATGGCACCCACCAA
ACCTCCACCTTCATCATCATCCAAATCTCCAGTAGTTACTCCACTGACTTGAACTCCTGCTTGG
TCTGTCACAGCAGAAACCTGGTTACAGCAGTTTAGCATAGTGTCAGGCAGAACCCTTATATTTG
AGATGTATAGCTTGAAAACAACATGTATTCTAGTAAATCTGAAGAAAACACTTGCCTTAATCAC
ACGTCCAGCTATATCAAGTTGCCCATTTAAACTCTGAGCAGCCTTTGCATCTTCAAGGCGTGCA
AACTACATGATGAAACAGAAGTCAGCCACACAGAACTCTCCACAAAAACAAAAGAATTGCTTAA
TAAGCAAACACTTGCCTGAACAAAACCAAAACCTTTACATAACCCAGTAAGTGGATCTAGTGGC
AATTGGACAAGCTCCACCTGACCAAACGGTTCGAAGACCTGGTAAAGAGAATTCATTAAACTCT
ATATATGCATAACAAGGATGCCATAGTAATTCTTCTACCCCATAAAAGTAATATGTTTTCCATT
ATGAACTCCAAGGGAAATTTTCTTCCAAAAGCACAGCCAACTCATCTAAAAAACAATTTGTCGG
CATCACCTGTCTCAATTGATCTTCAGTAATATTTGAGTGAAGATTTCCAACATACAACTTTCTT
GCCCCACCTGAAGCTGCTCCACTTGAAGAAGCATTTGACTGAACTAAATTCTTTTCAGCCTCTG
ATGGCTTAACCATCACCTGTTGACCAAGAAGCAGCTGGCCAGAAAGAGCTATTGCCATTGGTAC
AGACATAACATCATAGAATTCGATGTACCTGGAAACGCAAAAGCATAATAAATATCAGGATATC
ATGTCGCCGATAGAATTAGGCCGCATTCGTTCAATCTTTTGAAAAGATATTCAGTTATTCACAT
AAAATCTTGCATATCAAACATTTTCAAACAGGTTTAGAATTAATTTTTCCCAGCACAAACTAAT
TGCACATTCCTCCAACCAAAATCATATGAAAATGCGCAGAAATGGCATCCAATAATGTGGAATT
GCTATGTTTGATGTTCCACGCTGCTTACTTCCCCCAAAAAGATCTTGTATTCCATCTTAGTCAT
AAGTAGCTGATTATCCCAGTAGATACACCAAATTATAAACATTCCTGCCGAGTATGAAAAATCG
GTGAATATATTCCCCCATAATAAATCGTAGATGTAGCTACAGTTTAAAAATGCTTGTGTAATCA
TAACAGCAACCAGAAAAATATTGACAAATATGGTCGGTATTCATTAACATTTGAAATACCCTAC
CAATCACCCCCCACCCAAAAAACAATTCTCACACATTTGATCTCTTTGCAGCCTCTTGTGAGAC
ATCTACTCCACTCTGGTTCATACCTTCTGATTCAGTTCATCTCCTTCCCTTGTTGCCCACCAAC
AATGGACCTTACAGCACACCTACACTCACGTGCAAACATGCCTAACATTGAATCCAACAACCTA
AATCACAATATTTGCCACATGAGCACAAAACTGGAGCAGCTTTACAGAAAGCTAGGAGGCATTT
GCTATTTGCTTGCTACAAACAAATGGCTTAGCAACACAGACTAAAACCCCAAAACAGTGGGTCC
ATCTCCCTCATTCTCAGTAAGTCAATATTGCCACTTGGACACAAAACCAGAAGCATTATGAGCA
CAAACTAACGAGTTCATTCCGATACTGTAAAACCTAAAATCAAGCCCCACCCTCCCTCTCTAGA
TCTCAGGTTATGAATCCATGGGAGGCACCAAACGACCAAGGTAACAATCAGTAGAACACCAAAG
TCTAATCAGATCTTTTGGAGATTCTAAAACAGGAAACACAAGTAACACCCTGCCTCCCTCCCAT
CAAATGTGTAAACAATAGATATATTTGGCTATTATAAGCAAACTGCTAGATATTCCAAGCCACT
AAGAAAATAAAACCCCTCTTTTAGCAACTCAAGGAAAAAAAACAGGTAACAAATAAAACAACGA
TCTGATATGTTGCACAGAATTCACTATAAAAACTCACCCAACTCCTTTAGAACGGCGCGAGTTT
CGGTCCATGATGAGGCGAACATCCCGGACCTACAAAAAGTAATCAATGTCAGCACAGTTATTGA
TTTGATGCAATGACAAGAGACTGAACAAATGCGCAGCAACCATCAGAAGAACTTTTTTTCCCAC
CAAACCACAATTATAGGCCGTAAATGTTCATCTGCTAATCATAAAATATTTTACTACTAAAGAG
GATACAAGCAAATTCAAAGTGAGGATCACCTTCCCAGCCCTTGAAAAGAATTCGTACACGTCTC
TTTCATCCGCCTTCAGAGATAACTGTGATTATGCTCACAAACATTAGTTTCAAATAGAAAAGGC
TTCAGCATTTTCCTGGTCACAAAGTGAAATTCAAATGTTACACTAAAATGCACCTGGTAGGCAA
ATACTGTCCTTTGATCTCGTTCTGGATCTGCTTCAGGCTCTCCAGCCTCTTCTTTCCTACGT
Conservation Information
Conserved circRNAs NA
PMCS 0.204195969
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017