Detail information of BGIOSGA002466_circ_g.3


General Information
CircRNA Name BGIOSGA002466_circ_g.3
ID in PlantcircBase osi_circ_001779
Alias 1:1891645|1892865
Organism Oryza sativa ssp. indica
Position chr1: 1891645-1892865  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA002466
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA002466_circ_g.1 BGIOSGA002466_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA002466-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGCCCAGGGGAACTGGGCGGCGCTCACGCTTGCAAATGACCTGCCAAAGTAGTCGGCGAACCG
CATGAGCTGAATATCCTGCTGGTTCTCGTAAGATTCctgggcccttggagtttgctgtgcggcc
ttctttgaacccttagcgcctactgcttgacctgacagttcagacatgatgctgtctatgcacc
acatgaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGGCCCTTGGAGTTTGCTGTGCGGCCTTCTTTGAACCCTTAGCGCCTACTGCTTGACCTGAC
AGTTCAGACATGATGCTGTCTATGCACCACATGACAAAGTCTCCCAGGGCATCAGGAGATCTCT
GATTGATCCAGTCACTCGCTGTGTTGCGAACTGGTTCAGGAATATGGCACAAGGGAATCTGCAC
AATATATTAACTAGTTAGATGCAAATCTAAAAATAGAGAGACACGGAAATAAAGGGACATTTTC
ATGCTTATAAAATCAAAACAGAAGTACTAGAATCCATTAATACACTGAATTATTAATTGCACGA
GTATGTGTCGTTTCTTTTCTGGAATGAAACATATTGCATATTTATCAAGCAATCGCTTCCGATT
TATTAGAGGCTAAGAAATTCCATGCTAATCCAATTAATGTGTACCCTGATACACCCATTTACTC
CTCATACTACAATCCGCACCAACCCCCCACCTTCCAAATTAACTTGCCTCCACGCCTCCCCCTT
TCAGAGCGGAAAATGGAAGGAACTGAACACAATACCATGTCACAAATACAGAAAGATTTTTGGA
CAATGCGGATTTCAGGTAAACCGTTAAATGTAAACTCAAGTTGTTGCAGTAATTGCATTGAACT
TATCCAGCTGTATCCTGTTATACATGAATAATCGTGTTCGGAAATAATTTGTTTTAATTGATAA
TGCATCCACAGGGTGAGCAGAAATAGCATAACCATCCTTAAAACTAGCATACTTGACAAGCACG
TTTACAGCGACGTCAAGTCTGCAAATAATTCGAATAATATTACTGGCAGTTACCAAAAGCAGCA
TTAGCATTTCACAACTCAATGATGACGATGCATGAATCAGTATCAATGTTCATGCACAACCATT
AATTTTCGTAAAATTTGTAAGTAGATACAAGAAAAAGATCATAAGAACTTAACAATCAGATAAA
CCGCAGTAACATTTCATATGTGATGCAAGTGAATCACCCTATAAACTGCAATTGCCTTTTTATA
TCTGGTCCAAATGCAATATCTCTATGCGTAAAAGAGTTAGGGCAACTCTAGTAACTCACATCAA
CCATCTTGGACACTAGTGATTCCTTGAACATCTTCGCCCAGGGGAACTGGGCGGCGCTCACGCT
TGCAAATGACCTGCCAAAGTAGTCGGCGAACCGCATGAGCTGAATATCCTGCTGGTTCTCGTAA
GATTC
Conservation Information
Conserved circRNAs osa_circ_000209*
PMCS
Functional Information
Coding potential Y
Potential coding position 1892834-1891647(-)
Potential amino acid sequence MRFADYFGRSFASVSAAQFPWAKMFKESLVSKMVDIPLCHIPEPVRNTASDWINQRSPDALGDF
VMWCIDSIMSELSGQAVGAKGSKKAAQQTPRAQESYENQQDIQLMRFADYFGRSFASVSAAQFP
WAKMFKESLVSKMVDIPLCHIPEPVRNTASDWINQRSPDALGDFVMWCIDSIMSELSGQAVGAK
GSKKAAQQTPRAQESYENQQDIQLMRFADYFGRSFASVSAAQFPWAKMFKESLVSKMVDIPLCH
IPEPVRNTASDWINQRSPDALGDFVMWCIDSIMSELSGQAVGAKGSKKAAQQTPRAQESYENQQ
DIQLMRFADYFGRSFASVSAAQFPWAKMFKESLVSKMVDIPLCHIPEPVRNTASDWINQRSPDA
LGDFVMWCIDSIMSELSGQAVGAKGSKKAAQQTPRAQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021