Detail information of BGIOSGA002466_circ_g.2


General Information
CircRNA Name BGIOSGA002466_circ_g.2
ID in PlantcircBase osi_circ_009519
Alias Chr01:1574180_1575401(MH63RS2), Chr01:1468414_1469635(ZS97RS2), Chr01:1574180_1575401(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 1891644-1892865  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA002466
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA002466_circ_g.1 BGIOSGA002466_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA002466-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGCCCAGGGGAACTGGGCGGCGCTCACGCTTGCAAATGACCTGCCAAAGTAGTCGGCGAACCG
CATGAGCTGAATATCCTGCTGGTTCTCGTAAGATTCcctgggcccttggagtttgctgtgcggc
cttctttgaacccttagcgcctactgcttgacctgacagttcagacatgatgctgtctatgcac
cacatgac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGGCCCTTGGAGTTTGCTGTGCGGCCTTCTTTGAACCCTTAGCGCCTACTGCTTGACCTGA
CAGTTCAGACATGATGCTGTCTATGCACCACATGACAAAGTCTCCCAGGGCATCAGGAGATCTC
TGATTGATCCAGTCACTCGCTGTGTTGCGAACTGGTTCAGGAATATGGCACAAGGGAATCTGCA
CAATATATTAACTAGTTAGATGCAAATCTAAAAATAGAGAGACACGGAAATAAAGGGACATTTT
CATGCTTATAAAATCAAAACAGAAGTACTAGAATCCATTAATACACTGAATTATTAATTGCACG
AGTATGTGTCGTTTCTTTTCTGGAATGAAACATATTGCATATTTATCAAGCAATCGCTTCCGAT
TTATTAGAGGCTAAGAAATTCCATGCTAATCCAATTAATGTGTACCCTGATACACCCATTTACT
CCTCATACTACAATCCGCACCAACCCCCCACCTTCCAAATTAACTTGCCTCCACGCCTCCCCCT
TTCAGAGCGGAAAATGGAAGGAACTGAACACAATACCATGTCACAAATACAGAAAGATTTTTGG
ACAATGCGGATTTCAGGTAAACCGTTAAATGTAAACTCAAGTTGTTGCAGTAATTGCATTGAAC
TTATCCAGCTGTATCCTGTTATACATGAATAATCGTGTTCGGAAATAATTTGTTTTAATTGATA
ATGCATCCACAGGGTGAGCAGAAATAGCATAACCATCCTTAAAACTAGCATACTTGACAAGCAC
GTTTACAGCGACGTCAAGTCTGCAAATAATTCGAATAATATTACTGGCAGTTACCAAAAGCAGC
ATTAGCATTTCACAACTCAATGATGACGATGCATGAATCAGTATCAATGTTCATGCACAACCAT
TAATTTTCGTAAAATTTGTAAGTAGATACAAGAAAAAGATCATAAGAACTTAACAATCAGATAA
ACCGCAGTAACATTTCATATGTGATGCAAGTGAATCACCCTATAAACTGCAATTGCCTTTTTAT
ATCTGGTCCAAATGCAATATCTCTATGCGTAAAAGAGTTAGGGCAACTCTAGTAACTCACATCA
ACCATCTTGGACACTAGTGATTCCTTGAACATCTTCGCCCAGGGGAACTGGGCGGCGCTCACGC
TTGCAAATGACCTGCCAAAGTAGTCGGCGAACCGCATGAGCTGAATATCCTGCTGGTTCTCGTA
AGATTC
Conservation Information
Conserved circRNAs osa_circ_000209
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021