Detail information of BGIOSGA031393_circ_g.1


General Information
CircRNA Name BGIOSGA031393_circ_g.1
ID in PlantcircBase osi_circ_008708
Alias Chr10:24115917_24120842(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21274880-21279805  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA031393
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031393_circ_igg.1 BGIOSGA031393_circ_igg.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA031393-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGCACTAATGCCTCAAGAGCCCCTGCTTCCTGACCCACAGCGGCATTATTATTGTTGTTATC
TCCATGTGCGGCTAAGTTAGCTAATGCCCTTGCAGCcctgaagaagggcaaaggcagcacaagc
gcgaagaattgatgcaggattccggagcatggcaacaaatctagcgatctcggcaccactgaag
ggaagtaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGAAGAAGGGCAAAGGCAGCACAAGCGCGAAGAATTGATGCAGGATTCCGGAGCATGGCAAC
AAATCTAGCGATCTCGGCACCACTGAAGGGAAGTAAAGGACTATATTAGTACTACATTCCTCTT
AGCTACATTGCTACCAAGACAGGTCCAAAATAAGATGAACGGGACAAGCATGAATCCGGTTTAA
AATGTTCCACATGCTCTGCCTAAAGAATAGCCAGCTAAACTTCAGGAATAGTAAAACTTTAGTG
AAAGAATAAAGCCAAACCTGCATCTCAGGTGTCCAGCTTCTTGTATAAACACTGCATCAGCAAT
CTGAGATAGTGCTGCTGAGGCTGAGGAGGTGGAAGCCGTAGTGAAAACTTGTGGGTCCGAAAAT
GTCAGAACAAAAGTCTGTATATGCTTCAAAGCCATTCTCCTAGCTCCCTCAACATTAACACTCT
TGGAACTGCCCTCTGATGACGTCCCAACCAATGCAACCTCATCCATTCTGTCATTTGAGAAAAT
TCAGTTTTAGACTTTGCAAATTTCTTATTAAGATAATATTGCACATCAGCAATGGCCTATGCAC
TACACGTTTTTTGTCAAGCAAAACACAGTCCGATTATACAAGTAATCTGCTAGCCATGCTAGTA
TGCTGCGAAAGATAAAGCCAAGTACATCACATTGTGATACTGTGTTAGCATCTACAGTTAACTG
CTTTTCAAGTAAGTAGTACAAGGAAATGGGAACTATTTAATATAAAAATATAACTATTAAATAC
AGAAAGAATATAATTCTTAATAGCAACAACAATAAAAATAATGCTGTCAAGTTTCAATGCAAAA
GAAACCAATTCAAATACTGCTGCAAAAAAATAAATCTTATTTGCCAAAAAAATGCCATGTGCTT
GCACAATTTAATACGACAGTAGGAAAGTTAGCAGGGGATGCACACCAACAATAGGCTGATCTAC
AATGGTAAGTTAACTTTTTAATTCCTCAGAAGTGGTTTTTACCAATCATTGAATACAGACGCTC
TCTCTCTCTCTCTCTCAGAGAGAATATGTGGAGCCCTTAAAGTATCAATGTATCACTCATGGAT
GTTATTCTTCAATAAGGAGAGTAAGGAGTTAAGGTAACTATAGTCAGACATTACTAAGAAAACA
ATTAACAGAAGCAATATATACAAACCAACTTAAACGGAGCTTGTAGGCTCATAGCTACAAACAG
AATGTCAAATGAGCCCTAAACTTGCAATCTAAGTTGCTGCTGAAAAATAAGCAACTTGGTGATT
AATTGAAGTCACCAAACTCTTTTATAAACCAATGCATATTTTTCTGTGTGTGTAGAATAACTAA
TCGTCATAATAAGGCTCGAAGCACTGTGTATATTGCATTCAAGACAAAGGTATATCACAAAGAA
CATGAATAGATAGAATTATGAAGATAACACTACTGGATCAATCGGCATTCTAGAATAACTGTGT
GCTGTTAGCCTGCTGGTAGAGTTTAAAGTCCTTATACAAATCAAAATTGAATGAAATACACCAT
AATTCAAAAGCAAACAGATAAAATAATCGGTTTGAAAAACAACATACCTTCCATCGAACATATA
AGCAAGGGCTAGCGCAGACATGAAACGTGCCATTTTTGACCCTGATGATGAGCAAAGCCGCACT
AGAATAGGAACCCCACCTTCTTCAACAATACAGAGAGCATTACCAGAATAGAAAGCAAGATTCC
ATAGTGCCCCTGCAGCTGTCTCGTGAACATCCTGAATAAACAGAAAGTCGTCATATCTAGAGTA
AGGAATAGCATTCATTCCCAATGACAGATAAAACATTTATTCCCAACGATAGATATAACAATCT
ACAGTAACTGTCAATGCCAACGTTCCTTGTTTTATCCATAATTTTATTTTTTTTTCAAAAAAAA
CTTACACCCGTTACCATATTAAAAAGAGAGAGAAAAACTACCCTCTTTATCAAACAATGGGCTG
GGCTGTGCACTCTAACAAACAAACAGAATAAATTGACGTGAGATCAAAGTACTATCAAACCATT
AGAGAACAAATAAATTGCATGCCTGCAGCAGGCAGCAGGACAATATTAATACTCAAATAAATGA
TGTTTTCCCCATCAGAATATGTTCTCTCAAGCAATTGGAATAATATTATATAAACTGGAATAAC
ATTATATAAACAGTGGCACAGCCAGGATTTTCCTAGGCATGGTTAGAAAACAATGGCATGAAGC
AACAAATTAAGTTGAAATGGATTAAGGATGTTTAAATCTGATAAGATAAATGAATGTTTTTAGT
CACTTGGACATATAAGTTGCATACATGTGCGTATATGTTAGTAAAAGCATATACTTGATCTTGT
GCCCAAAATAAATAAATAAATAAATAAAATCAGGGTACAAATATATCCCCATGAATCATCGCCA
CTGGATATAAAGTTGACTAAAAAAGTTTAATACATATACTACATTGAACTCCTGAAAGGCATGT
ACAAAAAGAATAACACGACGAGTGGTAGCTTCATAAAACCAGAACATTAGGTAAAAGCACAAGC
TGAAGGTGGCGCACTAACCATGAAATTACTTATAATCAAGTAGCTACTTCAACAAACTCGTCTG
TTTGTTCATGGACAATACTAGTCAAACGTATCTCAAGATATGACAGACTACGGCATGGAGCAAC
TAATATTTCCAGGTGCCAGGCAGAAGGTCTATCATAAAGAAAAAAAGTGATTTGGAGTCCCTAA
GTAACAGAATGTATTCGCACATCAATATATGATGTATCAGACATAAAGAATATACAATTGTAAA
TGAAACTTACTTCAACATCTGATTGTGCCAGTGTGAGCAAAGGTGCGACACCACCCTCCTGTCC
AATTGCCATACTGAAAAAGGCAAATAAAAGTTGTCAACAAGAATGTTGGAGAAAGGAATAACAA
GCGATAGATGGAGGAAATTATCTGGTACGGAAAGACGAGAGATGCAGTTCTCTTTATTGCAGCA
AGTCTGTAAAAAAGGCCAACTAGGGAGAGAGAGAGAGAGAGAGAGAGAATTGATTACAAGTTGC
GACCTAAAAGGGGCGCTCCTCATTCATTTACAGGCAGTTATCAGACACTCGCCTCACACTGTGC
CTACACTTACCCTCCAGACAAAAATTTCATCCATCGCTTGCACATATGATCTGGAATTCATCAG
CACTAATTTTCCAGTAGCTATATTATTAACCCAAAACAGACCACACCCTGCTACTACCATCTAA
CACCAGGGTCACCAAAAAAGTCTATGGAAATAGGAGGCAATCTACAAAAAAAATGGTTAAAGTG
GATCGTGTGCTAAGATAATGCAATTCAAAATAAGCATGCAGTGCAAACCATCCACCATCTATAT
CCATCAAGCCATCAAGAGCTTTGAAGTTGAGTGCGAGATTGAAGTGTTCAAGTGTGGTCCTGAA
TTTAGCGCAGGCACAGCTGTCATTAAGGCTGTGTTCTTTCCCCTTCTTTCCCAACTCACCTCCC
CCTTTTTTCGCGCGCACGCTTTTCAAACTGCTAAAAGGTGTGTTTTTCACAAAAAGTTTTCTAT
AGGAAAGTTGCTTTAAAAAATCATATTAATCCATTTTTCAAGTTTTTTAGGCTAATACTTAATT
AATCATGCATTAATGGGCAACACTGTTTTACATGTGGGGAGGTGGAGTTCCCAACTCCACCTCC
TGAACTCAGCCTAAGTGTAAGTGTGTAACTAACTTTGATATCAGCATATTTTCATCATGTGTGA
AGCTATCTGATATGAATGTTAGGAAATATAGAAACTCAGGACCAATCTAGGCATACCACAATGT
GCAATTTTTAACAATTGCTGTGCATGACATCTAAAAGTGAACTGTGAACGGATTCAAATTTGAC
TTAGGAGAGTAAGTGTTTTTTTAAATTATTAATACACTTTTCTTGATTGACACTAAGCTAGCTT
TCACTAATTCCAAAAAAAAAAGTGCATTACTAAGTTTAAGTGTTTATGGACAATCAACTTGTAC
ACTTCATCAGCTAGGCATGTCACAAAGAATATCTTAAAAATAGGTCAATCTGGTAGTTGGTGCA
AGTTCAGTTCATGAGCAAGCATATGAAGTTACCTGTTAGCTTCTGAAACAGATAGTCCCCATAA
TGCGCCAGCAGCTCTCTCCTGAAGGCCTTCCGAAGCATTCAAACATTCTTGTGCAAGTGAAACC
TAAAATATGAAAGCCATCTATGTGAAAAATATAAACAGCTTATTTAAGTCTATTTATGAAAAGA
TGGGAGGAGCACACACAAATGATCTTTAAAACATTGTGTCCTAGAACCAGTTCCACGGGTAAAC
ATAGAAGATTTATTATTATTTAGTTGATAGTCGGTATAACACAGTACTAATAAACATATTCAAG
AGAATATGTTCAATCAGAATTAATCAAATAACTAGAGGTTTCTACAGACCAATATTTTTATTCA
GAACTGCTATATGAAAAACTTTATAGAGGGATTGCATCTATTTACTGAACTAGATGTACTGCTT
AATACAATGTTGATCAAAGGATGCAAAGCTGTGTTAAAGCACAAATGGGGCACGTACCAAAGCT
TCAACGCCACCCGCAGCAGCAATGCCTTCACGGTTTCTATCATCAAATGACAGATTCCACAGAG
CACCAGCAGCTTCTTGTCTAATTAAATGCACAGGAATCACAATATTAAATTAGGATAATATAAA
GTATAATTTAATGGCAAAATCAGGCGTTGCAACTTAAAACAGCACATCAGCTAGAAGTATACCT
TACACCCTCATTTTGAGAGCTTGTTAGCTGCACTAATGCCTCAAGAGCCCCTGCTTCCTGACCC
ACAGCGGCATTATTATTGTTGTTATCTCCATGTGCGGCTAAGTTAGCTAATGCCCTTGCAGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021