Detail information of BGIOSGA031393_circ_igg.1


General Information
CircRNA Name BGIOSGA031393_circ_igg.1
ID in PlantcircBase osi_circ_008707
Alias Chr10:24613220_24615577(ZS97RS2), Chr10:24115321_24117675(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21274284-21276638  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA031393_circ_igg.2 BGIOSGA031393_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCACTAGAATAGGAACCCCACCTTCTTCAACAATACAGAGAGCATTACCAGAATAGAAAGCAAG
ATTCCATAGTGCCCCTGCAGCTGTCTCGTGAACATCccttgggccgcaattttgcgatgttttg
aacaggctgagaaggctgctgaagaaatgccttgttggaagattagcataagctccactgctgt
gctttcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGGGCCGCAATTTTGCGATGTTTTGAACAGGCTGAGAAGGCTGCTGAAGAAATGCCTTGTT
GGAAGATTAGCATAAGCTCCACTGCTGTGCTTTCATGTTGAAGTCCCTGTCTGATGGTGTTCCA
AATTTCTGAGGACAATTCTTGCAAAGACTTTGGCTTCGATAGAAGCGGTCGTGGCTGCTGCTGC
TGCGCGCAAGACTCGAGCTGCCCCTGCTTTCTGCAGGAGACCCGCATGGTGCACTGCGTGCCGA
CCTCCAGGGATTGTGAACTGCATTATGTTGGGAGTATTCTCATTAGATCTATAAGTATGTTTTG
CTGGATGGTAAAATCATTTTGCATCAAATAGAAGAGCAGATGGAAGTCCTCTTGTGTGAATGTC
TGAGTATTTTGTGTGCGCACGTGTGTTTGAGAGATAAAAACACAAATACATGCAAGCATGATAT
TAATCATGAGGTATGGTTCCTCTTCTTAGAACAGATCAATGGTGCTCAACTTTCATAATGTCTT
GTGCATGCGGAATAGCCAAGGAATACGTTGGTTCTCAATAGATAGGGGTCTTCAGAATATTAAG
ATGGTACGGAAGGAAACAAACCTGAAGAAGGGCAAAGGCAGCACAAGCGCGAAGAATTGATGCA
GGATTCCGGAGCATGGCAACAAATCTAGCGATCTCGGCACCACTGAAGGGAAGTAAAGGACTAT
ATTAGTACTACATTCCTCTTAGCTACATTGCTACCAAGACAGGTCCAAAATAAGATGAACGGGA
CAAGCATGAATCCGGTTTAAAATGTTCCACATGCTCTGCCTAAAGAATAGCCAGCTAAACTTCA
GGAATAGTAAAACTTTAGTGAAAGAATAAAGCCAAACCTGCATCTCAGGTGTCCAGCTTCTTGT
ATAAACACTGCATCAGCAATCTGAGATAGTGCTGCTGAGGCTGAGGAGGTGGAAGCCGTAGTGA
AAACTTGTGGGTCCGAAAATGTCAGAACAAAAGTCTGTATATGCTTCAAAGCCATTCTCCTAGC
TCCCTCAACATTAACACTCTTGGAACTGCCCTCTGATGACGTCCCAACCAATGCAACCTCATCC
ATTCTGTCATTTGAGAAAATTCAGTTTTAGACTTTGCAAATTTCTTATTAAGATAATATTGCAC
ATCAGCAATGGCCTATGCACTACACGTTTTTTGTCAAGCAAAACACAGTCCGATTATACAAGTA
ATCTGCTAGCCATGCTAGTATGCTGCGAAAGATAAAGCCAAGTACATCACATTGTGATACTGTG
TTAGCATCTACAGTTAACTGCTTTTCAAGTAAGTAGTACAAGGAAATGGGAACTATTTAATATA
AAAATATAACTATTAAATACAGAAAGAATATAATTCTTAATAGCAACAACAATAAAAATAATGC
TGTCAAGTTTCAATGCAAAAGAAACCAATTCAAATACTGCTGCAAAAAAATAAATCTTATTTGC
CAAAAAAATGCCATGTGCTTGCACAATTTAATACGACAGTAGGAAAGTTAGCAGGGGATGCACA
CCAACAATAGGCTGATCTACAATGGTAAGTTAACTTTTTAATTCCTCAGAAGTGGTTTTTACCA
ATCATTGAATACAGACGCTCTCTCTCTCTCTCTCTCAGAGAGAATATGTGGAGCCCTTAAAGTA
TCAATGTATCACTCATGGATGTTATTCTTCAATAAGGAGAGTAAGGAGTTAAGGTAACTATAGT
CAGACATTACTAAGAAAACAATTAACAGAAGCAATATATACAAACCAACTTAAACGGAGCTTGT
AGGCTCATAGCTACAAACAGAATGTCAAATGAGCCCTAAACTTGCAATCTAAGTTGCTGCTGAA
AAATAAGCAACTTGGTGATTAATTGAAGTCACCAAACTCTTTTATAAACCAATGCATATTTTTC
TGTGTGTGTAGAATAACTAATCGTCATAATAAGGCTCGAAGCACTGTGTATATTGCATTCAAGA
CAAAGGTATATCACAAAGAACATGAATAGATAGAATTATGAAGATAACACTACTGGATCAATCG
GCATTCTAGAATAACTGTGTGCTGTTAGCCTGCTGGTAGAGTTTAAAGTCCTTATACAAATCAA
AATTGAATGAAATACACCATAATTCAAAAGCAAACAGATAAAATAATCGGTTTGAAAAACAACA
TACCTTCCATCGAACATATAAGCAAGGGCTAGCGCAGACATGAAACGTGCCATTTTTGACCCTG
ATGATGAGCAAAGCCGCACTAGAATAGGAACCCCACCTTCTTCAACAATACAGAGAGCATTACC
AGAATAGAAAGCAAGATTCCATAGTGCCCCTGCAGCTGTCTCGTGAACATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021