Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G21610_circ_g.2 |
ID in PlantcircBase | ath_circ_003784 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 7575193-7577346 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G21610 |
Parent gene annotation |
Wound-responsive family protein |
Parent gene strand | + |
Alternative splicing | AT1G21610_circ_g.1 AT1G21610_circ_g.3 AT1G21610_circ_g.4 AT1G21610_circ_g.5 AT1G21610_circ_g.6 AT1G21610_circ_g.7 AT1G21610_circ_g.8 AT1G21610_circ_g.9 AT1G21610_circ_g.10 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G21610.4:8 AT1G21610.3:8 AT1G21610.5:8 AT1G21610.6:8 AT1G21610.2:8 AT1G21610.1:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.100781066 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
7575434-7577343(+) |
Potential amino acid sequence |
MEPSTTSNQQPKKRRRKDSAKPCRDAVDVSDKHTKLSITARKKDQSTAPGSWKTQESPLPSGAQ DANTSVPLDDVKHSDRANHQSRNDTSHKSRETGSSSALHQKYSNKSLHQQSTSLLGKSPPNVFA EVTVVRQKENNGMHQLANVTGSRQSSQASKKDGSNVKSKTSILEKAIRELEKVVVESRPPAITE NQEADTSSQAVKRRLPRDVKLKLAKVARIAASQGKHSTELINRLMSIVGHLIQLRSLKRNLKIM IDMGDSATREKDTRFKQINNEVLDMIKAKVSLMESQGNDSSDGEELDGAPDDDEYDTEDSFIDD AELDEYFEVDNSTVKHDGFYVNRGKLERMEPSTTSNQQPKKRRRKDSAKPCRDAVDVSDKHTKL SITARKKDQSTAPGSWKTQESPLPSGAQDANTSVPLDDVKHSDRANHQSRNDTSHKSRETGSSS ALHQKYSNKSLHQQSTSLLGKSPPNVFAEVTVVRQKENNGMHQLANVTGSRQSSQASKKDGSNV KSKTSILEKAIRELEKVVVESRPPAITENQEADTSSQAVKRRLPRDVKLKLAKVARIAASQGKH STELINRLMSIVGHLIQLRSLKRNLKIMIDMGDSATREKDTRFKQINNEVLDMIKAKVSLMESQ GNDSSDGEELDGAPDDDEYDTEDSFIDDAELDEYFEVDNSTVKHDGFYVNRGKLERMEPSTTSN QQPKKRRRKDSAKPCRDAVDVSDKHTKLSITARKKDQSTAPGSWKTQESPLPSGAQDANTSVPL DDVKHSDRANHQSRNDTSHKSRETGSSSALHQKYSNKSLHQQSTSLLGKSPPNVFAEVTVVRQK ENNGMHQLANVTGSRQSSQASKKDGSNVKSKTSILEKAIRELEKVVVESRPPAITENQEADTSS QAVKRRLPRDVKLKLAKVARIAASQGKHSTELINRLMSIVGHLIQLRSLKRNLKIMIDMGDSAT REKDTRFKQINNEVLDMIKAKVSLMESQGNDSSDGEELDGAPDDDEYDTEDSFIDDAELDEYFE VDNSTVKHDGFYVNRGKLERMEPSTTSNQQPKKRRRKDSAKPCRDAVDVSDKHTKLSITARKKD QSTAPGSWKTQESPLPSGAQDANTSVPLDDVKHSDRANHQSRNDTSHKSRETGSSSALHQKYSN KSLHQQSTSLLGKSPPNVFAEVTVVRQKENNGMHQLANVTGSRQSSQASKKDGSNVKSKTSILE KAIRELEKVVVESRPPAITENQEADTSSQAVKRRLPRDVKLKLAKVARIAASQGKHSTELINRL MSIVGHLIQLRSLKRNLKIMIDMGDSATREKDTRFKQINNEVLDMIKAKVSLMESQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |