Detail information of Os04g0620000_circ_g.18


General Information
CircRNA Name Os04g0620000_circ_g.18
ID in PlantcircBase osa_circ_025329
Alias Os04circ14060/Os_ciR9580
Organism Oryza sativa
Position chr4: 31509926-31511730  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene Os04g0620000
Parent gene annotation C-type ATP-binding cassette (ABC) transporter, Arsenic (As) deto
xification, Reduction of As in grains (Os04t0620000-01)
Parent gene strand -
Alternative splicing Os04g0620000_circ_g.7 Os04g0620000_circ_g.8 Os04g0620000_circ_g.9 Os04g0620000_circ_g.10 Os04g0620000_circ_g.11 Os04g0620000_circ_g.12 Os04g0620000_circ_g.13 Os04g0620000_circ_g.14 Os04g0620000_circ_g.15 Os04g0620000_circ_g.16 Os04g0620000_circ_g.17 Os04g0620000_circ_g.19 Os04g0620000_circ_g.20 Os04g0620000_circ_g.21 Os04g0620000_circ_g.22 Os04g0620000_circ_g.23 Os04g0620000_circ_g.24 Os04g0620000_circ_g.25 Os04g0620000_circ_g.26 Os04g0620000_circ_g.27
Support reads 4/2/1
Tissues leaf and panicle/root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0620000-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCTGCGTCAGTTGAAATCAAATTGGTTATCCTCCCAGAGGCAAACTTCTTTCGACTATCATT
AGTTAGTCGCAAAGACTTACGGAAAACAGCTGCGATctgagttatcagatttggcagcataaaa
agtggaaatcttaagacagcaaacagtgaaagtgatgtgaacgcctttgctggtgtcaagtcac
ctcccagc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 612
Transcript exons: 31509926-31510093,31510376-31510469,31510553-31510659,31
511214-31511348,31511623-31511730
CTGAGTTATCAGATTTGGCAGCATAAAAAGTGGAAATCTTAAGACAGCAAACAGTGAAAGTGAT
GTGAACGCCTTTGCTGGTGTCAAGTCACCTCCCAGCAGAGAGTATACACCAAATGAAACCACAG
TGACAATAACGGGGATACTGTTTAGGATGAAGCTATTCAGCGCAGCAAGCAATTGAGCGCTGCG
GAACCATGAAATTTCATCATCACGGATGTCCTGCACTTTTGACTGGAAACTTTGCTCCCAAGCA
TAACATTTGACCGTATCCATTGCAGCTAATATTTCATTCATTAGACTGATTCTCCTGTCAGTCC
TTTGCAACCCTTCCTTGGTAAGTTTTTGCATTTTGCTTATGATAACAGTCTGAATTGGGAACAA
AAGAACCAACATGGCTGCACCGACCAATGCAGCAGGGCCTAGTTGTGCGTATAGAAGGACCATG
GCAATAACAATGCGGAAAGGAGCAGACCATAGACTGTGAAGTTGCTGGCACACTTGCTGAAGAG
ATTCTGCGTCAGTTGAAATCAAATTGGTTATCCTCCCAGAGGCAAACTTCTTTCGACTATCATT
AGTTAGTCGCAAAGACTTACGGAAAACAGCTGCGAT

Genomic sequence CTGAGTTATCAGATTTGGCAGCATAAAAAGTGGAAATCTTAAGACAGCAAACAGTGAAAGTGAT
GTGAACGCCTTTGCTGGTGTCAAGTCACCTCCCAGCAGAGAGTATACACCAAATGAAACCACAG
TGACAATAACGGGGATACTGTTTAGGATGAAGCTATTCAGCTGCAGCAGACAAGGAAAAATACA
AAAGATAATAGTGAGCCGACAATAAGGGATGCAACAACTCATTCTCATATCTATTTTAAGTTTG
AGTAACTAAGTAAATTATTGTAAACAAACTTTATAGGACCAGGAAGCACCAGTACAATCGATAC
TATAGCATGCAACTCCAAAACTTATTGTGTAATAAGGAGAGTTCATGGATGCACGATTAAAAAA
GAGATCATATATAGCAGAATGAAATTGACACAAGTGAAAGATAACTTAAATACAAAATGGACAT
ACCGCAGCAAGCAATTGAGCGCTGCGGAACCATGAAATTTCATCATCACGGATGTCCTGCACTT
TTGACTGGAAACTTTGCTCCCAAGCATAACATCTAACCAAGAAAATGTTTGGAACAGTTTATAC
CAAAATTTTAGTACTACTTCTAGTAAAAACACAAGTAAATGTAAAGCATACTTGACCGTATCCA
TTGCAGCTAATATTTCATTCATTAGACTGATTCTCCTGTCAGTCCTTTGCAACCCTTCCTTGGT
AAGTTTTTGCATTTTGCTTATGATAACAGTCTGGTAAATTAAATAAAGAAAATGTTAACAGTCA
GATCTATGTTGAAAGTAGCAAAAGTTTGCTTAAAAGTAAAATCGTTATTTGAAATGCATATATC
ATTCATAAAAATAGCATAATCTGAAAATCAGCAACTGTTAAGTGCCCTGGCAATTTGCATTATA
AGCTTCAAAAGAGAAAGCATGAGCAATATGGATTAGCCAAATATTAGGGATTTAAGCATTGACT
TGATCAACTCCAATTTATGGACAACATCAAAGAATTTCTTACGGGGTATGGCAGAAAACTAAGC
AGACGTACAAACAGTACTACAATACAACCTCAGGATAGATAACAGGAAGTAGAATCAACAACTA
AATGATGGCATGAAAGACTCTAATGTGAACTCTAGGCTCCATATAAGAATCGATATATCAGTAC
AATCTTTCTGCACATTCCCTAAAAAGAATCAAAATATAAAAAACACAAAGTAGATATTGGTAAT
GTAGGGACCAGATAGAAAGTTAAAAATGCAACATAAGACCTTCCATAATTGAATGTCTAAAGAG
AAATCTACCTGAATTGGGAACAAAAGAACCAACATGGCTGCACCGACCAATGCAGCAGGGCCTA
GTTGTGCGTATAGAAGGACCATGGCAATAACAATGCGGAAAGGAGCAGACCATAGACTGTGAAG
TTGCTGGCACACTTGCTGCAAAAGTAAAAAAAGTACAAACCAAATGTACAACATAAGATATAAA
TAACCATAGCTCCATATTGTAGCACATATTGTATTTCTTGCTCCATTGCTCTTTCCTAACAAAA
CATTTCCACGGTTTTCCATTTACTTATCAATTCAGACATCAACAAGGTATCTAACATATCATTT
GGTTTTTTATCTAATTTTATGTTGCCAAACAATATTTAAAATCAATAATGTTGAAGAACTGGGT
AACACTGATTAAACCTATGAAATAAAATCACACCTGAAGAGATTCTGCGTCAGTTGAAATCAAA
TTGGTTATCCTCCCAGAGGCAAACTTCTTTCGACTATCATTAGTTAGTCGCAAAGACTTACGGA
AAACAGCTGCGAT
Conservation Information
Conserved circRNAs osi_circ_014876
PMCS 0.235711136
Functional Information
Coding potential Y
Potential coding position 31511293-31509928(-)
Potential amino acid sequence MVLLYAQLGPAALVGAAMLVLLFPIQTVIISKMQKLTKEGLQRTDRRISLMNEILAAMDTVKCY
AWEQSFQSKVQDIRDDEISWFRSAQLLAALNSFILNSIPVIVTVVSFGVYSLLGGDLTPAKAFT
SLSLFAVLRFPLFMLPNLITQIAAVFRKSLRLTNDSRKKFASGRITNLISTDAESLQQVCQQLH
SLWSAPFRIVIAMVLLYAQLGPAALVGAAMLVLLFPIQTVIISKMQKLTKEGLQRTDRRISLMN
EILAAMDTVKCYAWEQSFQSKVQDIRDDEISWFRSAQLLAALNSFILNSIPVIVTVVSFGVYSL
LGGDLTPAKAFTSLSLFAVLRFPLFMLPNLITQIAAVFRKSLRLTNDSRKKFASGRITNLISTD
AESLQQVCQQLHSLWSAPFRIVIAMVLLYAQLGPAALVGAAMLVLLFPIQTVIISKMQKLTKEG
LQRTDRRISLMNEILAAMDTVKCYAWEQSFQSKVQDIRDDEISWFRSAQLLAALNSFILNSIPV
IVTVVSFGVYSLLGGDLTPAKAFTSLSLFAVLRFPLFMLPNLITQIAAVFRKSLRLTNDSRKKF
ASGRITNLISTDAESLQQVCQQLHSLWSAPFRIVIAMVLLYAQLGPAALVGAAMLVLLFPIQTV
IISKMQKLTKEGLQRTDRRISLMNEILAAMDTVKCYAWEQSFQSKVQDIRDDEISWFRSAQLLA
ALNSFILNSIPVIVTVVSFGVYSLLGGDLTPAKAFTSLSLFAVLRFPLFMLPNLITQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA