Plant Circular RNA Database

Detail information of Os12g0430000_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os12g0430000_circ_g.7
					
						ID in PlantcircBase
						osa_circ_011374
					
						Alias
						Os_ciR3693
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr12: 13823004-13826125  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os12g0430000						
					
						Parent gene annotation
						
							Hypothetical conserved gene. (Os12t0430000-00)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os12g0430000_circ_g.3 Os12g0430000_circ_g.4 Os12g0430000_circ_g.5 Os12g0430000_circ_g.6 Os12g0430000_circ_g.8 Os12g0430000_circ_g.9 Os12g0430000_circ_g.10 Os12g0430000_circ_g.11 Os12g0430000_circ_g.12 						
					
						Support reads
						2/1
					
						Tissues
						root/shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os12t0430000-00:4

General Information
CircRNA Name	Os12g0430000_circ_g.7
ID in PlantcircBase	osa_circ_011374
Alias	Os_ciR3693
Organism	Oryza sativa
Position	chr12: 13823004-13826125 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os12g0430000
Parent gene annotation	Hypothetical conserved gene. (Os12t0430000-00)
Parent gene strand	-
Alternative splicing	Os12g0430000_circ_g.3 Os12g0430000_circ_g.4 Os12g0430000_circ_g.5 Os12g0430000_circ_g.6 Os12g0430000_circ_g.8 Os12g0430000_circ_g.9 Os12g0430000_circ_g.10 Os12g0430000_circ_g.11 Os12g0430000_circ_g.12
Support reads	2/1
Tissues	root/shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os12t0430000-00:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGGAAATTGCACTGCAAGCTGCAGCTGTTGCACCAGTCTGTATGGCATTCATGGAGACATCAAT
GAGGAAAAAATACACAGCTGGCATTGGATCACGAACcttcatagctgccccaaatgctgaatca
gcgaccctattgttctcgaacatgttagggatgctctccagtaattgctccaaattctcacggc
actaaagt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTCATAGCTGCCCCAAATGCTGAATCAGCGACCCTATTGTTCTCGAACATGTTAGGGATGCTC
TCCAGTAATTGCTCCAAATTCTCACGGCACTAAAGTCTCAAAAAATAAAATATTTCAATTTTTT
CCATGTACAGATTTTTCTTGTTCATGTTTGAATTGTTGACACTTTTTAACCCGTAACAAGAATT
ATAAGAAGCTAATAATCATAACACATTTGTCATTTGAGTGAATACAAACCTCAGAAATCAGGAG
AATCAGGTCAGTCTGAAGTGGAGTGTACACATCTTGGATGTCTGGAACAATAAGCATCAAAGGC
TGCAAGGGCAAACAGGTGAATGAACAGTTTAAATATTGAAATCCAATAACTAGCAAGGTTGTGA
ACAATAGTTAAAAAGCGGAAGTTTGATTGGTATGCACAAGCTTATGACATCATGCTTAGATTAT
GCTAAACTGCTCCATGGAACAACGATGGCCTTTTTTACTGCTTCATGGTCGGATGGCACACCAA
CACAGAAAAAATTACAATCTTTTGGAAATATAGCCAATGCAGTGCCCTATCCACCTTAGAACTT
TCAAGCTAAGACTTGATGATGTGAGGGAAACAAAAGGGATAATAATATATTTTTTTGTCAATAC
TGAATATCAACTTGTCCTCCATATTTCTTATAATTTATGTTCTATGAAACAATATCTTCTTTAT
CTCCAGGTGCTGATTAAAGCTAATGTCGATATTACATAAAGTGGTAAAGTAAACTGACACTACC
TGGACAACTTCCCATTTTGGAATCTTTCGCATTTATTTAACACCAGATGACCAGAACTAAAGTG
ATTTGGCTACTGGTATGCACTAGAACATGTCTTATCTTACCATAGAACAGATCTTGATTAATCG
TTAACCTAACGATGGGATGAAGCATATAAGGATTAAAATTGCTACCAGACACTCAAAGCATACC
TGTTGCTGATCACGTTTAAGACTGTAGAAATGAATAGCGGAATCAAATGTGGCAATCCCAACCA
TTGTTCGAGGACCTTCCTACAAAAGACATAACAATTGTCAAAGAAATTCCTATAGTGGTCCATT
TTTTTATTAAACTTATTGCTTATCTAAAATTTAAGGAGGCACAAAATAAGCAAAAGCACAAGAC
AGCTTTATCAAAACTAGCCAAGTAGCCATGTATTGCAACAGATTTCAAATAAATACATATCATA
AGTTCTAAACTTGAAAAAGCATAATTTGCAACAATCATAATTATCCACTGAAGATCCCACCAAC
TAAGAGGTGGTGGTAGGATGTCAGTATTCAGACATAACACCAATAACACCACTAGATCATTTCA
CAATTTGTTACATGTATAAATATTGGCATCAAACTAGGGTGCAGTTATTAAGGTTGTAGCAGCC
TGTGCTACTTCCACATTGATAGCAAGCACCTACCCACCGTGCTGCACGCAAACGCAACAATCAT
AATTATCCACTAAAGATCCCACCAACTAAGAGGTGGTGGTAGGATGTCAGTATTCAGACATAAC
ACCAATAACACCACTAGATCATTTCACAATTTGTTACATGTATAAATATTGGCATCAAACTAGG
GTGCAGTTATTAAGGTTGTAGCAGCCCGTGCTACTTCCACATTGATAGCAAGCACCTACCCACC
GGGCTGCACGCAAACCCACATGGATGCTTGGCAGGTTCCACCAGACCCACCAGCCAACATGGAT
TCATGCTCTGCATGTTCTCCACATGAAGTGAGCTGGTTCTAAGCCTCTAATTATGGAAGCTCCA
AGCGATACCAATGGCGAGGCACAGCTGCTTGTTGAACCTTCTGATGAACTCATTGATATTTGAT
CACATTCAATAGATCTGTGGATAAGAATATTTGTCCATCTGGCTCATTCACTCAACTACTGCCT
ACTTGCCATGCCTTTCCCTCATGATGAACGAGTCCATTACGCAAGGCCACCACACCCACTGGGG
CAGGGCTGCACACATAGGGCAGCATCCACAATGCCGGGGAAAGTATCAAAGGGTAGTGCTTGGC
TGTAGTACCTGCATTGTCATTAAGGAGGCTGACATCCCAGGTGGCGGTGGCAATGAGGGACTGA
GTTATTAACCAAACCTGCCAGCCCCTTTTCATAACCTACTGGGCGATGTACAAGAGATCAATAG
GGCAGCACCAAAAGCCTTGTGGGTCTGCTGCATAAACATGCTTTACCTAAGTGGGCCCTTGGGG
TAGTGTTGGTGGGCTAGTGGCCCAAGCCAGCCCAGAAGGTTAGTGGCAAGACTAACACCACTTG
CACCCTTACATTCGACCTTTCCAAACTCCCATTATTAGGGAACAAGGAATGGGTGTGGGCCGAC
CCACGGGTAATGGTTGACCCACTCTAATTCAACTAAATGAACTAAACCCCAAAAAAGTGAAATT
TAATTCATTTAATTGAACTAGAGTGAGACAACCATTACCTGCATACTGGGCCAGTGCCCATTCC
TATGATCATGATCATTCCAAAAGTGATTTCAAAACTAGTGACCAGTTCTTGCACTGACCCATTA
GAGATATATTCGGGTTTACCCAAATTTATGATGTATAGAATGACAAACAAATCAGAAGATGAAA
TTAGCCAATAAGGGAATGTGAATCCCTCATTATCCCATATAGCACAACAACATAAAGGGTGAGC
AAATGGCTCAAATTTGTCTTGTTTCATGGCTATGATGTTGGCACATGGAACAGAAGCAAATGCT
GATTTGCAGACACAGTATCCTCGAAGTTAGTTAAAGAATAAACCATAATCATAAAAAAAGGAAA
GACAAATCAAAATTCAAAAAGTTAACTGCAAAATCTGTTTTACACAGGTGAAAATCTGATGTAA
ACATGTCCAGGTTGCAAGGATAAATTAGTAGGTACAATCAAGATGATTGCACGTTAGCATGAAG
TGATAAAGTTTTTTGTGTGCGCTCACTGATTATACATGAAAACAGCATGTAAACTTACAGGAAG
GTCCGAAAGAGCCTGGGAAATTGCACTGCAAGCTGCAGCTGTTGCACCAGTCTGTATGGCATTC
ATGGAGACATCAATGAGGAAAAAATACACAGCTGGCATTGGATCACGAAC
						
					

			
		

Sequences
Splice junction sequence	GGGAAATTGCACTGCAAGCTGCAGCTGTTGCACCAGTCTGTATGGCATTCATGGAGACATCAAT GAGGAAAAAATACACAGCTGGCATTGGATCACGAACcttcatagctgccccaaatgctgaatca gcgaccctattgttctcgaacatgttagggatgctctccagtaattgctccaaattctcacggc actaaagt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTCATAGCTGCCCCAAATGCTGAATCAGCGACCCTATTGTTCTCGAACATGTTAGGGATGCTC TCCAGTAATTGCTCCAAATTCTCACGGCACTAAAGTCTCAAAAAATAAAATATTTCAATTTTTT CCATGTACAGATTTTTCTTGTTCATGTTTGAATTGTTGACACTTTTTAACCCGTAACAAGAATT ATAAGAAGCTAATAATCATAACACATTTGTCATTTGAGTGAATACAAACCTCAGAAATCAGGAG AATCAGGTCAGTCTGAAGTGGAGTGTACACATCTTGGATGTCTGGAACAATAAGCATCAAAGGC TGCAAGGGCAAACAGGTGAATGAACAGTTTAAATATTGAAATCCAATAACTAGCAAGGTTGTGA ACAATAGTTAAAAAGCGGAAGTTTGATTGGTATGCACAAGCTTATGACATCATGCTTAGATTAT GCTAAACTGCTCCATGGAACAACGATGGCCTTTTTTACTGCTTCATGGTCGGATGGCACACCAA CACAGAAAAAATTACAATCTTTTGGAAATATAGCCAATGCAGTGCCCTATCCACCTTAGAACTT TCAAGCTAAGACTTGATGATGTGAGGGAAACAAAAGGGATAATAATATATTTTTTTGTCAATAC TGAATATCAACTTGTCCTCCATATTTCTTATAATTTATGTTCTATGAAACAATATCTTCTTTAT CTCCAGGTGCTGATTAAAGCTAATGTCGATATTACATAAAGTGGTAAAGTAAACTGACACTACC TGGACAACTTCCCATTTTGGAATCTTTCGCATTTATTTAACACCAGATGACCAGAACTAAAGTG ATTTGGCTACTGGTATGCACTAGAACATGTCTTATCTTACCATAGAACAGATCTTGATTAATCG TTAACCTAACGATGGGATGAAGCATATAAGGATTAAAATTGCTACCAGACACTCAAAGCATACC TGTTGCTGATCACGTTTAAGACTGTAGAAATGAATAGCGGAATCAAATGTGGCAATCCCAACCA TTGTTCGAGGACCTTCCTACAAAAGACATAACAATTGTCAAAGAAATTCCTATAGTGGTCCATT TTTTTATTAAACTTATTGCTTATCTAAAATTTAAGGAGGCACAAAATAAGCAAAAGCACAAGAC AGCTTTATCAAAACTAGCCAAGTAGCCATGTATTGCAACAGATTTCAAATAAATACATATCATA AGTTCTAAACTTGAAAAAGCATAATTTGCAACAATCATAATTATCCACTGAAGATCCCACCAAC TAAGAGGTGGTGGTAGGATGTCAGTATTCAGACATAACACCAATAACACCACTAGATCATTTCA CAATTTGTTACATGTATAAATATTGGCATCAAACTAGGGTGCAGTTATTAAGGTTGTAGCAGCC TGTGCTACTTCCACATTGATAGCAAGCACCTACCCACCGTGCTGCACGCAAACGCAACAATCAT AATTATCCACTAAAGATCCCACCAACTAAGAGGTGGTGGTAGGATGTCAGTATTCAGACATAAC ACCAATAACACCACTAGATCATTTCACAATTTGTTACATGTATAAATATTGGCATCAAACTAGG GTGCAGTTATTAAGGTTGTAGCAGCCCGTGCTACTTCCACATTGATAGCAAGCACCTACCCACC GGGCTGCACGCAAACCCACATGGATGCTTGGCAGGTTCCACCAGACCCACCAGCCAACATGGAT TCATGCTCTGCATGTTCTCCACATGAAGTGAGCTGGTTCTAAGCCTCTAATTATGGAAGCTCCA AGCGATACCAATGGCGAGGCACAGCTGCTTGTTGAACCTTCTGATGAACTCATTGATATTTGAT CACATTCAATAGATCTGTGGATAAGAATATTTGTCCATCTGGCTCATTCACTCAACTACTGCCT ACTTGCCATGCCTTTCCCTCATGATGAACGAGTCCATTACGCAAGGCCACCACACCCACTGGGG CAGGGCTGCACACATAGGGCAGCATCCACAATGCCGGGGAAAGTATCAAAGGGTAGTGCTTGGC TGTAGTACCTGCATTGTCATTAAGGAGGCTGACATCCCAGGTGGCGGTGGCAATGAGGGACTGA GTTATTAACCAAACCTGCCAGCCCCTTTTCATAACCTACTGGGCGATGTACAAGAGATCAATAG GGCAGCACCAAAAGCCTTGTGGGTCTGCTGCATAAACATGCTTTACCTAAGTGGGCCCTTGGGG TAGTGTTGGTGGGCTAGTGGCCCAAGCCAGCCCAGAAGGTTAGTGGCAAGACTAACACCACTTG CACCCTTACATTCGACCTTTCCAAACTCCCATTATTAGGGAACAAGGAATGGGTGTGGGCCGAC CCACGGGTAATGGTTGACCCACTCTAATTCAACTAAATGAACTAAACCCCAAAAAAGTGAAATT TAATTCATTTAATTGAACTAGAGTGAGACAACCATTACCTGCATACTGGGCCAGTGCCCATTCC TATGATCATGATCATTCCAAAAGTGATTTCAAAACTAGTGACCAGTTCTTGCACTGACCCATTA GAGATATATTCGGGTTTACCCAAATTTATGATGTATAGAATGACAAACAAATCAGAAGATGAAA TTAGCCAATAAGGGAATGTGAATCCCTCATTATCCCATATAGCACAACAACATAAAGGGTGAGC AAATGGCTCAAATTTGTCTTGTTTCATGGCTATGATGTTGGCACATGGAACAGAAGCAAATGCT GATTTGCAGACACAGTATCCTCGAAGTTAGTTAAAGAATAAACCATAATCATAAAAAAAGGAAA GACAAATCAAAATTCAAAAAGTTAACTGCAAAATCTGTTTTACACAGGTGAAAATCTGATGTAA ACATGTCCAGGTTGCAAGGATAAATTAGTAGGTACAATCAAGATGATTGCACGTTAGCATGAAG TGATAAAGTTTTTTGTGTGCGCTCACTGATTATACATGAAAACAGCATGTAAACTTACAGGAAG GTCCGAAAGAGCCTGGGAAATTGCACTGCAAGCTGCAGCTGTTGCACCAGTCTGTATGGCATTC ATGGAGACATCAATGAGGAAAAAATACACAGCTGGCATTGGATCACGAAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.212214996

Conservation Information
Conserved circRNAs	NA
PMCS	0.212214996

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							13823994-13823024(+)
13826068-13823272(+)
13826115-13823006(-)
						
						Potential amino acid sequence
						
							MNSGIKCGNPNHCSRTFRKVRKSLGNCTASCSCCTSLYGIHGDINEEKIHSWHWITNLHSCPKC
*(+)
MAFMETSMRKKYTAGIGSRTFIAAPNAESATLLFSNMLGMLSSNCSKFSRHSEIRRIRSV*(+)
MPAVYFFLIDVSMNAIQTGATAAACSAISQALSDLPEGPRTMVGIATFDSAIHFYSLKRDQQQP
LMLIVPDIQDVYTPLQTDLILLISECRENLEQLLESIPNMFENNRVADSAFGAAMKVRDPMPAV
YFFLIDVSMNAIQTGATAAACSAISQALSDLPEGPRTMVGIATFDSAIHFYSLKRDQQQPLMLI
VPDIQDVYTPLQTDLILLISECRENLEQLLESIPNMFENNRVADSAFGAAMKVRDPMPAVYFFL
IDVSMNAIQTGATAAACSAISQALSDLPEGPRTMVGIATFDSAIHFYSLKRDQQQPLMLIVPDI
QDVYTPLQTDLILLISECRENLEQLLESIPNMFENNRVADSAFGAAMKVRDPMPAVYFFLIDVS
MNAIQTGATAAACSAISQALSDLPEGPRTMVGIATFDSAIHFYSLKRDQQQPLMLIVPDIQDVY
TPLQTDLILLISECRENLEQLLESIPNMFENNRVADSAFGAAMK(-)
						
						Sponge-miRNAs
						
							osa-miR1859 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	13823994-13823024(+) 13826068-13823272(+) 13826115-13823006(-)
Potential amino acid sequence	MNSGIKCGNPNHCSRTFRKVRKSLGNCTASCSCCTSLYGIHGDINEEKIHSWHWITNLHSCPKC (+) MAFMETSMRKKYTAGIGSRTFIAAPNAESATLLFSNMLGMLSSNCSKFSRHSEIRRIRSV(+) MPAVYFFLIDVSMNAIQTGATAAACSAISQALSDLPEGPRTMVGIATFDSAIHFYSLKRDQQQP LMLIVPDIQDVYTPLQTDLILLISECRENLEQLLESIPNMFENNRVADSAFGAAMKVRDPMPAV YFFLIDVSMNAIQTGATAAACSAISQALSDLPEGPRTMVGIATFDSAIHFYSLKRDQQQPLMLI VPDIQDVYTPLQTDLILLISECRENLEQLLESIPNMFENNRVADSAFGAAMKVRDPMPAVYFFL IDVSMNAIQTGATAAACSAISQALSDLPEGPRTMVGIATFDSAIHFYSLKRDQQQPLMLIVPDI QDVYTPLQTDLILLISECRENLEQLLESIPNMFENNRVADSAFGAAMKVRDPMPAVYFFLIDVS MNAIQTGATAAACSAISQALSDLPEGPRTMVGIATFDSAIHFYSLKRDQQQPLMLIVPDIQDVY TPLQTDLILLISECRENLEQLLESIPNMFENNRVADSAFGAAMK(-)
Sponge-miRNAs	osa-miR1859
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os12g0430000_circ_g.7

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