Detail information of Os12g0430000_circ_g.5


General Information
CircRNA Name Os12g0430000_circ_g.5
ID in PlantcircBase osa_circ_011372
Alias NA
Organism Oryza sativa
Position chr12: 13822763-13826480  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os12g0430000
Parent gene annotation Hypothetical conserved gene. (Os12t0430000-00)
Parent gene strand -
Alternative splicing Os12g0430000_circ_g.3 Os12g0430000_circ_g.4 Os12g0430000_circ_g.6 Os12g0430000_circ_g.7 Os12g0430000_circ_g.8 Os12g0430000_circ_g.9 Os12g0430000_circ_g.10 Os12g0430000_circ_g.11 Os12g0430000_circ_g.12
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0430000-00:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTGTTCCCCTACATAATTCAGGCCTGTCATCAGCATCGCGTCGCCTACCATCAGGACCTAAGT
TGCACAAGTACTCCCTTGGAGTATCATTGCTAAACCctgactggaacacgagtagttttccacc
agtagacttcatagcaaggaaactggcctgcatgcaacatacatacataattatcagcaacctg
tccagtga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGACTGGAACACGAGTAGTTTTCCACCAGTAGACTTCATAGCAAGGAAACTGGCCTGCATGCA
ACATACATACATAATTATCAGCAACCTGTCCAGTGAAGCATGTAGATAAAAAGATAGAACATAT
GTGCACTAATTTGATTACTTTTAACAAAATCTCCACCAAACAGGATATTACAGATTAAATCTCC
ACCATAAAAGCAGTAAACAGACAAAGGAAATGGTTGTGCAAAGTTGTACCTTCATAGCTGCCCC
AAATGCTGAATCAGCGACCCTATTGTTCTCGAACATGTTAGGGATGCTCTCCAGTAATTGCTCC
AAATTCTCACGGCACTAAAGTCTCAAAAAATAAAATATTTCAATTTTTTCCATGTACAGATTTT
TCTTGTTCATGTTTGAATTGTTGACACTTTTTAACCCGTAACAAGAATTATAAGAAGCTAATAA
TCATAACACATTTGTCATTTGAGTGAATACAAACCTCAGAAATCAGGAGAATCAGGTCAGTCTG
AAGTGGAGTGTACACATCTTGGATGTCTGGAACAATAAGCATCAAAGGCTGCAAGGGCAAACAG
GTGAATGAACAGTTTAAATATTGAAATCCAATAACTAGCAAGGTTGTGAACAATAGTTAAAAAG
CGGAAGTTTGATTGGTATGCACAAGCTTATGACATCATGCTTAGATTATGCTAAACTGCTCCAT
GGAACAACGATGGCCTTTTTTACTGCTTCATGGTCGGATGGCACACCAACACAGAAAAAATTAC
AATCTTTTGGAAATATAGCCAATGCAGTGCCCTATCCACCTTAGAACTTTCAAGCTAAGACTTG
ATGATGTGAGGGAAACAAAAGGGATAATAATATATTTTTTTGTCAATACTGAATATCAACTTGT
CCTCCATATTTCTTATAATTTATGTTCTATGAAACAATATCTTCTTTATCTCCAGGTGCTGATT
AAAGCTAATGTCGATATTACATAAAGTGGTAAAGTAAACTGACACTACCTGGACAACTTCCCAT
TTTGGAATCTTTCGCATTTATTTAACACCAGATGACCAGAACTAAAGTGATTTGGCTACTGGTA
TGCACTAGAACATGTCTTATCTTACCATAGAACAGATCTTGATTAATCGTTAACCTAACGATGG
GATGAAGCATATAAGGATTAAAATTGCTACCAGACACTCAAAGCATACCTGTTGCTGATCACGT
TTAAGACTGTAGAAATGAATAGCGGAATCAAATGTGGCAATCCCAACCATTGTTCGAGGACCTT
CCTACAAAAGACATAACAATTGTCAAAGAAATTCCTATAGTGGTCCATTTTTTTATTAAACTTA
TTGCTTATCTAAAATTTAAGGAGGCACAAAATAAGCAAAAGCACAAGACAGCTTTATCAAAACT
AGCCAAGTAGCCATGTATTGCAACAGATTTCAAATAAATACATATCATAAGTTCTAAACTTGAA
AAAGCATAATTTGCAACAATCATAATTATCCACTGAAGATCCCACCAACTAAGAGGTGGTGGTA
GGATGTCAGTATTCAGACATAACACCAATAACACCACTAGATCATTTCACAATTTGTTACATGT
ATAAATATTGGCATCAAACTAGGGTGCAGTTATTAAGGTTGTAGCAGCCTGTGCTACTTCCACA
TTGATAGCAAGCACCTACCCACCGTGCTGCACGCAAACGCAACAATCATAATTATCCACTAAAG
ATCCCACCAACTAAGAGGTGGTGGTAGGATGTCAGTATTCAGACATAACACCAATAACACCACT
AGATCATTTCACAATTTGTTACATGTATAAATATTGGCATCAAACTAGGGTGCAGTTATTAAGG
TTGTAGCAGCCCGTGCTACTTCCACATTGATAGCAAGCACCTACCCACCGGGCTGCACGCAAAC
CCACATGGATGCTTGGCAGGTTCCACCAGACCCACCAGCCAACATGGATTCATGCTCTGCATGT
TCTCCACATGAAGTGAGCTGGTTCTAAGCCTCTAATTATGGAAGCTCCAAGCGATACCAATGGC
GAGGCACAGCTGCTTGTTGAACCTTCTGATGAACTCATTGATATTTGATCACATTCAATAGATC
TGTGGATAAGAATATTTGTCCATCTGGCTCATTCACTCAACTACTGCCTACTTGCCATGCCTTT
CCCTCATGATGAACGAGTCCATTACGCAAGGCCACCACACCCACTGGGGCAGGGCTGCACACAT
AGGGCAGCATCCACAATGCCGGGGAAAGTATCAAAGGGTAGTGCTTGGCTGTAGTACCTGCATT
GTCATTAAGGAGGCTGACATCCCAGGTGGCGGTGGCAATGAGGGACTGAGTTATTAACCAAACC
TGCCAGCCCCTTTTCATAACCTACTGGGCGATGTACAAGAGATCAATAGGGCAGCACCAAAAGC
CTTGTGGGTCTGCTGCATAAACATGCTTTACCTAAGTGGGCCCTTGGGGTAGTGTTGGTGGGCT
AGTGGCCCAAGCCAGCCCAGAAGGTTAGTGGCAAGACTAACACCACTTGCACCCTTACATTCGA
CCTTTCCAAACTCCCATTATTAGGGAACAAGGAATGGGTGTGGGCCGACCCACGGGTAATGGTT
GACCCACTCTAATTCAACTAAATGAACTAAACCCCAAAAAAGTGAAATTTAATTCATTTAATTG
AACTAGAGTGAGACAACCATTACCTGCATACTGGGCCAGTGCCCATTCCTATGATCATGATCAT
TCCAAAAGTGATTTCAAAACTAGTGACCAGTTCTTGCACTGACCCATTAGAGATATATTCGGGT
TTACCCAAATTTATGATGTATAGAATGACAAACAAATCAGAAGATGAAATTAGCCAATAAGGGA
ATGTGAATCCCTCATTATCCCATATAGCACAACAACATAAAGGGTGAGCAAATGGCTCAAATTT
GTCTTGTTTCATGGCTATGATGTTGGCACATGGAACAGAAGCAAATGCTGATTTGCAGACACAG
TATCCTCGAAGTTAGTTAAAGAATAAACCATAATCATAAAAAAAGGAAAGACAAATCAAAATTC
AAAAAGTTAACTGCAAAATCTGTTTTACACAGGTGAAAATCTGATGTAAACATGTCCAGGTTGC
AAGGATAAATTAGTAGGTACAATCAAGATGATTGCACGTTAGCATGAAGTGATAAAGTTTTTTG
TGTGCGCTCACTGATTATACATGAAAACAGCATGTAAACTTACAGGAAGGTCCGAAAGAGCCTG
GGAAATTGCACTGCAAGCTGCAGCTGTTGCACCAGTCTGTATGGCATTCATGGAGACATCAATG
AGGAAAAAATACACAGCTGGCATTGGATCACGAACCTGAAAAGGTTGAAGATTACATTATCATT
AATACAATGTTATCAAAGTGAAATTATAAAATATATTACTGAAACTAGAATGTGAAAGTTCAGC
AGATACAGTGCAAATAAAAAGCTATTCTGCAGAAATACTGATCAATCAAATAAGACAAAACCAG
TAGACACATGCTTTACATTAGTAAGTTTCATGAATCTTGTGCACAATAAAAGGAGCAGGTAAGG
ACAGACCAGAAATTCCTTGGAGGCAATGAATTCAACTGTTCCCCTACATAATTCAGGCCTGTCA
TCAGCATCGCGTCGCCTACCATCAGGACCTAAGTTGCACAAGTACTCCCTTGGAGTATCATTGC
TAAACC
Conservation Information
Conserved circRNAs NA
PMCS 0.106127961
Functional Information
Coding potential Y
Potential coding position 13826068-13823272(+)
13826115-13822765(-)
Potential amino acid sequence MAFMETSMRKKYTAGIGSRTRNSLEAMNSTVPLHNSGLSSASRRLPSGPKLHKYSLGVSLLNPD
WNTSSFPPVDFIARKLAFIAAPNAESATLLFSNMLGMLSSNCSKFSRHSEIRRIRSV*(+)
MPAVYFFLIDVSMNAIQTGATAAACSAISQALSDLPEGPRTMVGIATFDSAIHFYSLKRDQQQP
LMLIVPDIQDVYTPLQTDLILLISECRENLEQLLESIPNMFENNRVADSAFGAAMKASFLAMKS
TGGKLLVFQSGFSNDTPREYLCNLGPDGRRRDADDRPELCRGTVEFIASKEFLVRDPMPAVYFF
LIDVSMNAIQTGATAAACSAISQALSDLPEGPRTMVGIATFDSAIHFYSLKRDQQQPLMLIVPD
IQDVYTPLQTDLILLISECRENLEQLLESIPNMFENNRVADSAFGAAMKASFLAMKSTGGKLLV
FQSGFSNDTPREYLCNLGPDGRRRDADDRPELCRGTVEFIASKEFLVRDPMPAVYFFLIDVSMN
AIQTGATAAACSAISQALSDLPEGPRTMVGIATFDSAIHFYSLKRDQQQPLMLIVPDIQDVYTP
LQTDLILLISECRENLEQLLESIPNMFENNRVADSAFGAAMKASFLAMKSTGGKLLVFQSGFSN
DTPREYLCNLGPDGRRRDADDRPELCRGTVEFIASKEFLVRDPMPAVYFFLIDVSMNAIQTGAT
AAACSAISQALSDLPEGPRTMVGIATFDSAIHFYSLKRDQQQPLMLIVPDIQDVYTPLQTDLIL
LISECRENLEQLLESIPNMFENNRVADSAFGAAMKASFLAMKSTGGKLLVFQS(-)
Sponge-miRNAs osa-miR1859
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017