CircRNA Name |
AT1G17720_circ_g.4 |
ID in PlantcircBase |
ath_circ_003148 |
Alias |
At_ciR5764, Ath_circ_FC0416, AT1G17720_C1 |
Organism |
Arabidpsis thaliana |
Position |
chr1: 6094338-6094605 JBrowse» |
Reference genome |
TAIR10.38 |
Type |
e-circRNA
|
Identification method |
CIRCexplorer, PcircRNA_finder, find_circ, CIRI2 |
Parent gene |
AT1G17720 |
Parent gene annotation |
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subuni t B |
Parent gene strand |
- |
Alternative splicing |
AT1G17720_circ_g.1 AT1G17720_circ_g.2 AT1G17720_circ_g.3 AT1G17720_circ_g.5 AT1G17720_circ_g.6 AT1G17720_circ_g.7 AT1G17720_circ_g.8 AT1G17720_circ_g.9 AT1G17720_circ_g.10 AT1G17720_circ_g.11 |
Support reads |
2/1 |
Tissues |
leaf/aerial, seed |
Exon boundary |
Yes-Yes
"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
|
Splicing signals |
CT-AC
The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
|
Number of exons covered |
AT1G17720.1:2 AT1G17720.2:2
|