Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G17720_circ_g.8 |
ID in PlantcircBase | ath_circ_003152 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 6094862-6095923 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G17720 |
Parent gene annotation |
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subuni t B |
Parent gene strand | - |
Alternative splicing | AT1G17720_circ_g.1 AT1G17720_circ_g.2 AT1G17720_circ_g.3 AT1G17720_circ_g.4 AT1G17720_circ_g.5 AT1G17720_circ_g.6 AT1G17720_circ_g.7 AT1G17720_circ_g.9 AT1G17720_circ_g.10 AT1G17720_circ_g.11 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G17720.2:4 AT1G17720.1:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.208967788 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6095460-6094864(-) |
Potential amino acid sequence |
MEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALCDSHTKLFEEPEAPGSRSFFTEII ASISDIKFSKDGRYILSRDYMTLKVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISAD DLRVNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSA LCDSHTKLFEEPEAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKVTSQETNLVARCRRV YAHAHDYHINSISNSSDGETFISADDLRVNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFH PIHCNMLAYSSSKGSIRLIDMRQSALCDSHTKLFEEPEAPGSRSFFTEIIASISDIKFSKDGRY ILSRDYMTLKVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLRVNLWNLEISNQ SFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALCDSHTKLFEEPEA PGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |