Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os07g0598300_circ_g.6 |
ID in PlantcircBase | osa_circ_034649 |
Alias | NA |
Organism | Oryza sativa |
Position | chr7: 24408850-24412240 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os07g0598300 |
Parent gene annotation |
Hypothetical conserved gene. (Os07t0598300-01);Hypothetical cons erved gene. (Os07t0598300-02);DEAD-like helicase, N-terminal dom ain containing protein. (Os07t0598300-03) |
Parent gene strand | + |
Alternative splicing | Os07g0598300_circ_g.1 Os07g0598300_circ_g.2 Os07g0598300_circ_g.3 Os07g0598300_circ_g.4 Os07g0598300_circ_g.5 Os07g0598300_circ_g.7 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os07t0598300-03:6 Os07t0598300-02:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.208973314 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
24409034-24412237(+) 24408872-24412201(-) 24409036-24412170(-) |
Potential amino acid sequence |
MEEADGCKKSPRNLTTQEIGIVKIPGFSEWFLNHFIMKEPADNGSLDSQSNCQKTIIFAHHLKV LDGVQVFVTEQRIKYVRIDGSTSPRERKDAVDSFRLNPEVMVAIIGITAGGVGLDFSSAQNVVF VELPKSASELLQAEDRAHRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNGKKDAIR EIEIRRLKEHLLNELPPKRRQIIWLKLNASDIKTAISCIKGVNTSDEIPTIASPDNSNDSEEVN MEEADGCKKSPRNLTTQEIGIVKIPGFSEWFLNHFIMKEPADNGSLDSQSNCQKTIIFAHHLKV LDGVQVFVTEQRIKYVRIDGSTSPRERKDAVDSFRLNPEVMVAIIGITAGGVGLDFSSAQNVVF VELPKSASELLQAEDRAHRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNGKKDAIR EIEIRRLKEHLLNELPPKRRQIIWLKLNASDIKTAISCIKGVNTSDEIPTIASPDNSNDSEEVN MEEADGCKKSPRNLTTQEIGIVKIPGFSEWFLNHFIMKEPADNGSLDSQSNCQKTIIFAHHLKV LDGVQVFVTEQRIKYVRIDGSTSPRERKDAVDSFRLNPEVMVAIIGITAGGVGLDFSSAQNVVF VELPKSASELLQAEDRAHRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNGKKDAIR EIEIRRLKEHLLNELPPKRRQIIWLKLNASDIKTAISCIKGVNTSDEIPTIASPDNSNDSEEVN MEEADGCKKSPRNLTTQEIGIVKIPGFSEWFLNHFIMKEPADNGSLDSQSNCQKTIIFAHHLKV LDGVQVFVTEQRIKYVRIDGSTSPRERKDAVDSFRLNPEVMVAIIGITAGGVGLDFSSAQNVVF VELPKSASELLQAEDRAHRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNGKKDAIR EIE(+) MLLQAPNLNLSYSIFLSIHQ*(-) MFTSSESLLLSGEAIVGISSLVFTPLIQDIAVLISDAFSFNQIICRRLGGSSFNKCSFKRLISI SLIASFFPFINDETRNRLWFK*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |