Detail information of Os07g0598300_circ_g.6


General Information
CircRNA Name Os07g0598300_circ_g.6
ID in PlantcircBase osa_circ_034649
Alias NA
Organism Oryza sativa
Position chr7: 24408850-24412240  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os07g0598300
Parent gene annotation Hypothetical conserved gene. (Os07t0598300-01);Hypothetical cons
erved gene. (Os07t0598300-02);DEAD-like helicase, N-terminal dom
ain containing protein. (Os07t0598300-03)
Parent gene strand +
Alternative splicing Os07g0598300_circ_g.1 Os07g0598300_circ_g.2 Os07g0598300_circ_g.3 Os07g0598300_circ_g.4 Os07g0598300_circ_g.5 Os07g0598300_circ_g.7
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os07t0598300-03:6
Os07t0598300-02:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACACATTAGATGAGTCACATTGGCTTCATTTGAACCAGAGTCTGTTCCGTGTCTCATCATTG
ATGAATGGAAAGAAAGATGCTATAAGAGAGATTGAGattaggcgcttgaaggagcatttgttga
atgaactacctcccaaacgtcgacagattatttggttgaagctgaatgcatcagatatcaagac
agctatat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTAGGCGCTTGAAGGAGCATTTGTTGAATGAACTACCTCCCAAACGTCGACAGATTATTTGGT
TGAAGCTGAATGCATCAGATATCAAGACAGCTATATCTTGTATCAAAGGGGTGAACACTAGTGA
TGAGATTCCTACAATTGCCTCGCCAGACAATAGCAATGACTCTGAGGAGGTGAACATGGAAGAA
GGTAACACTCATTGAGCTAATGGCAGATATGATAATGAGACCTCCTTGTATCAGTTATAATTTT
ATGTGCCTTTGTTATGCTGAAATATATAATACACACCTTGTTGCATTTGAATGTTTGATATTGT
TAGATTTCAGAACTATAACAAAATGCAACAACTTATATGGAACTGTAATTTTGTTGAAGCTTGC
TTGGCATTTGTGGCATATGCAATGCCAAACATGTATGGGTTTACAGCTTTGCATATTGGCAGTT
GGTTATGACATAAGCAATGCAATATGGCGCAGTATGGTATTGTACTTGACACTGTCTGAATCGA
AATTTATTTACAACTTCTTTTCAAAAAGAGCCATTTTCTTATCTATAGTAACAGAGAACATTTG
TCAAGAAAAAGATAACCAGCATTTTTGTTGATTTCTGTTCTGAAGAACACTATGTATATCAAGT
AGAAATGTTGGTGCAACTGTGCAATATCCTGTTGTACTTTACAGGTGAAGAACATTACTTGCCA
TTTCCAATCATTGTACTTATTTTTTTTTAAAAAAATTCTGATATGTTAAACATGAACTACCATG
ATCAAAACATTATGTTTCTTTTTGACAAACAACCAGGCAACCACCTCTTTTTAAGAGTAGCGTG
CCACTTTAAAGGAGACAACCTTCCTCTTTTTATCCTTATGTAACATGTTTCTTTCTCATAAACA
ATTATTAATGTAACAATGTTAAATGTAACACTGGTATTAACACTTGGGATAAAGCACATGTTTT
CTACTATTTCAGGGTTCAAGATTAGTAAGATTGGTCTGTCTGCTCCTTATAAACATTGTGCTCA
TTTCCTTGTATTTCCTTTTCATTTGCCCACAGCTGATGGTTGCAAGAAATCTCCAAGGAATCTC
ACTACACAAGAAATTGGTATTGTGAAAATACCTGGGTTCAGCGAGTGGTTCTTAAATCATTTCA
TCATGAAAGAACCAGCTGATAATGGTAGTCTGGACTCTCAGTCTAATTGCCAGAAAACAATAAT
TTTCGCCCATCATTTAAAGGTCCTAGATGGAGTTCAGGTAAATTCTGAGGTTTCTTTTCTGTAT
TTTTTTTGCGAGTTTATCATGCTATGTTTCTCACGATTGACAATAGAATCTTGAACAGTAAGAA
AAGATTTATAATCACAACTATGTTACTTTATGTAATTTTGATTTTGCAAGTATCATTTCAACTA
TTTGTAGTTCTATATATCTTGTAAGCTTCACTTCCTCCTAATGAAATAGAAGTTTCATCTTTAG
AGTAAATGAAACAAAATAAATGATGTGTCAAGAAGCTGGACTATAGGATCTCATATGAATAGAA
ACACTGGTGTATGTGTAAAATTGGTCTGGCCATGTACATGTCATTGGCACCGTTTTTTAGAAGC
CACCAGTACCATGTCCAGCATTCTGGCATTCTCTAGCATATAATACTCTTTCTGTGGGACTGTA
GATGTTCTCGTAATGGTTTGGAAGTTTTTTTTGTCGAATACGCAAGATGCATATCATTGCATTA
ATAGGAGTCCAAACACGCCAAAGAACAGCAAGAAGTACAAGACCTCACCACCGCAAAACAACCC
ATTGCAAAGGCGGTTACATGACCAAAAGGAACTAAAACTAAAATAAAATGCCCTAGCTGGGGTC
CATAATTAGGGAGAGCCCCTTAGCCCCGCCAAATTACATAGGCCAGCTTCCTCACTTGCTAACA
TCAAGTCGGTTGATAAACTTGGAGATACTCCATTGAAGACAATCATCCCATTGCCGCCATGTTC
AAGATAGTCCATTAATCAGTTGAATACATGGAAAAAATCAGACTAATGATCAATCGGATATTCG
GGTGCACACTTTCACTTTATAATAGTTAGATAGCATTATATCATATTAAACTATACCATCTAAC
TTTATGAAAAACATTTGCCAATACTTTTGACTGAAGTTTTTCTTCGTACGTAGGTGTTTGTCAC
AGAGCAGAGGATCAAGTATGTCCGCATTGACGGAAGCACATCTCCTAGGGAAAGGAAAGATGCT
GTCGATTCTTTCCGTTTAAATCCAGAGGTTGTCCCTTCCCTTCCATTCGGTTCGATTCATACTT
GGTATTCCATGTTAAGCTCTCAAGTTTTATTCTCAAACTGCCTATCCATTATTTACTATTTTAC
TAGTTCTTTTATTTTCTACCAAATAGGTAATGGTTGCAATTATTGGAATTACTGCTGGCGGTGT
TGGTTTAGATTTCTCATCTGCTCAGAATGTTGTTTTCGTGGAGCTCCCAAAGTCAGCTTCAGAG
TTGCTTCAGGTCCTTAGCCTTCTCTCTTGCACATACATTTTCCTCATCCATAGGGTACAAGAAG
ACTTTTGAGTTTTTTTTCACCATCCTGTTGTGTAGCCCACCATTCACAATTCGCACTATGATAT
TATTTATATGTACTGTAGCAACTGCAGTATTATTCACTGGGCCTGGTGGTGTAGCTTTAATTGG
AATTCAGAGATAAGAATAATTAGTTTTATTGTTGGGTTTATTTCTTTATATATATGTAAGTTTC
TTTACAGATATGTTTTCCATAGGGATCAGGTCAAGTCATCCCCTATCAGTCGAGCAAGAAGAAA
TGTTTCTCCTCTATTTGCTTAAAAACACTTATTCCTATTTGCTCTCTTTTGATCCCTTTACGCC
TCTTACCCAATCTGTCTATTGCCTGCTTCAAATGCAATTCTGCATGGTCTTTATCCCGATGTGG
ACTAAGATTATCTGGTAAATGAAACAAATCAATAATGCACAGTAAATTGCTACATTTCATGGTT
CATGCGCATGAGTTTTCATGCTTTCGCACACTTAATGTGTGTGCTCTCTTGGACGCATGCATGG
TGCACCCTACTGTTAGTGTTTGTTTATTGTGTTTCTAACTGTTTGGTACATTTGATTGTTGATG
ATAGGCTGAGGATAGAGCTCATAGGCGAGGTCAAACAAATGCTGTCAACATATATATATTCTGT
GCAAGGGTTAGTTCCTTTTTTTTTTCCTGTAGCGTACTTTGTAATTTTGTCAAATTATAACTAT
AAATTGTTCTGTTTTGTCTTGGTCACAGAACACATTAGATGAGTCACATTGGCTTCATTTGAAC
CAGAGTCTGTTCCGTGTCTCATCATTGATGAATGGAAAGAAAGATGCTATAAGAGAGATTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.208973314
Functional Information
Coding potential Y
Potential coding position 24409034-24412237(+)
24408872-24412201(-)
24409036-24412170(-)
Potential amino acid sequence MEEADGCKKSPRNLTTQEIGIVKIPGFSEWFLNHFIMKEPADNGSLDSQSNCQKTIIFAHHLKV
LDGVQVFVTEQRIKYVRIDGSTSPRERKDAVDSFRLNPEVMVAIIGITAGGVGLDFSSAQNVVF
VELPKSASELLQAEDRAHRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNGKKDAIR
EIEIRRLKEHLLNELPPKRRQIIWLKLNASDIKTAISCIKGVNTSDEIPTIASPDNSNDSEEVN
MEEADGCKKSPRNLTTQEIGIVKIPGFSEWFLNHFIMKEPADNGSLDSQSNCQKTIIFAHHLKV
LDGVQVFVTEQRIKYVRIDGSTSPRERKDAVDSFRLNPEVMVAIIGITAGGVGLDFSSAQNVVF
VELPKSASELLQAEDRAHRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNGKKDAIR
EIEIRRLKEHLLNELPPKRRQIIWLKLNASDIKTAISCIKGVNTSDEIPTIASPDNSNDSEEVN
MEEADGCKKSPRNLTTQEIGIVKIPGFSEWFLNHFIMKEPADNGSLDSQSNCQKTIIFAHHLKV
LDGVQVFVTEQRIKYVRIDGSTSPRERKDAVDSFRLNPEVMVAIIGITAGGVGLDFSSAQNVVF
VELPKSASELLQAEDRAHRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNGKKDAIR
EIEIRRLKEHLLNELPPKRRQIIWLKLNASDIKTAISCIKGVNTSDEIPTIASPDNSNDSEEVN
MEEADGCKKSPRNLTTQEIGIVKIPGFSEWFLNHFIMKEPADNGSLDSQSNCQKTIIFAHHLKV
LDGVQVFVTEQRIKYVRIDGSTSPRERKDAVDSFRLNPEVMVAIIGITAGGVGLDFSSAQNVVF
VELPKSASELLQAEDRAHRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNGKKDAIR
EIE(+)
MLLQAPNLNLSYSIFLSIHQ*(-)
MFTSSESLLLSGEAIVGISSLVFTPLIQDIAVLISDAFSFNQIICRRLGGSSFNKCSFKRLISI
SLIASFFPFINDETRNRLWFK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017