Plant Circular RNA Database

Detail information of Os07g0598300_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os07g0598300_circ_g.7
					
						ID in PlantcircBase
						osa_circ_034650
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 24408850-24415132  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0598300						
					
						Parent gene annotation
						
							Hypothetical conserved gene. (Os07t0598300-01);Hypothetical cons
erved gene. (Os07t0598300-02);DEAD-like helicase, N-terminal dom
ain containing protein. (Os07t0598300-03)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os07g0598300_circ_g.1 Os07g0598300_circ_g.2 Os07g0598300_circ_g.3 Os07g0598300_circ_g.4 Os07g0598300_circ_g.5 Os07g0598300_circ_g.6 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0598300-03:14
Os07t0598300-02:14

General Information
CircRNA Name	Os07g0598300_circ_g.7
ID in PlantcircBase	osa_circ_034650
Alias	NA
Organism	Oryza sativa
Position	chr7: 24408850-24415132 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0598300
Parent gene annotation	Hypothetical conserved gene. (Os07t0598300-01);Hypothetical cons erved gene. (Os07t0598300-02);DEAD-like helicase, N-terminal dom ain containing protein. (Os07t0598300-03)
Parent gene strand	+
Alternative splicing	Os07g0598300_circ_g.1 Os07g0598300_circ_g.2 Os07g0598300_circ_g.3 Os07g0598300_circ_g.4 Os07g0598300_circ_g.5 Os07g0598300_circ_g.6
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0598300-03:14 Os07t0598300-02:14

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACTGTCACGAGCTTGTCAAGAATATCAGACCATTATGCAAGAAAAAGAGAGAAGAATACATTAG
GAATGTTGCTCCAAATATTGCAAGTAGATTGAAATTattaggcgcttgaaggagcatttgttga
atgaactacctcccaaacgtcgacagattatttggttgaagctgaatgcatcagatatcaagac
agctatat

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1949
Transcript exons: 24408850-24409042,24409906-24410102,24411015-24411116,24
411244-24411354,24411990-24412055,24412142-24412240,2441
2767-24412854,24412960-24413087,24413205-24413336,244134
12-24413501,24413631-24413939,24414467-24414651,24414741
-24414843,24414987-24415132
ATTAGGCGCTTGAAGGAGCATTTGTTGAATGAACTACCTCCCAAACGTCGACAGATTATTTGGT
TGAAGCTGAATGCATCAGATATCAAGACAGCTATATCTTGTATCAAAGGGGTGAACACTAGTGA
TGAGATTCCTACAATTGCCTCGCCAGACAATAGCAATGACTCTGAGGAGGTGAACATGGAAGAA
GCTGATGGTTGCAAGAAATCTCCAAGGAATCTCACTACACAAGAAATTGGTATTGTGAAAATAC
CTGGGTTCAGCGAGTGGTTCTTAAATCATTTCATCATGAAAGAACCAGCTGATAATGGTAGTCT
GGACTCTCAGTCTAATTGCCAGAAAACAATAATTTTCGCCCATCATTTAAAGGTCCTAGATGGA
GTTCAGGTGTTTGTCACAGAGCAGAGGATCAAGTATGTCCGCATTGACGGAAGCACATCTCCTA
GGGAAAGGAAAGATGCTGTCGATTCTTTCCGTTTAAATCCAGAGGTAATGGTTGCAATTATTGG
AATTACTGCTGGCGGTGTTGGTTTAGATTTCTCATCTGCTCAGAATGTTGTTTTCGTGGAGCTC
CCAAAGTCAGCTTCAGAGTTGCTTCAGGCTGAGGATAGAGCTCATAGGCGAGGTCAAACAAATG
CTGTCAACATATATATATTCTGTGCAAGGAACACATTAGATGAGTCACATTGGCTTCATTTGAA
CCAGAGTCTGTTCCGTGTCTCATCATTGATGAATGGAAAGAAAGATGCTATAAGAGAGATTGAG
GTTGATCAAGTTTACCACCTTGAGGAAAGCAGTAAATCTGAGGGAAAATCACAGCTTGGATTTC
TTCCTTTGGAGAATCATAATGCTGATTGTGGGCATGGACCAGGAGAGAATGTAGAAAGTGATGA
TATGTCCATTGAGAATTTTCCTGGCCTCAACGATATGAATTTTGAGTCAGATTTCTTCAGTATT
AGGACAATTCCTCTTCACTTTGAGGATGATAGCCTTCATACGGTAATGCAAAATTGTCCATCTC
CAACAGCACATGAAGAGATAGCTTTTGATAGTTCTTCTATCTCTCAAGCTTCAGTTATTTGCCC
TTCAATGTCAAGCGCTAAATCAGTAAAGGCTCGTCGGAGGCTTTCTGAAATTTTTCAGACTTTA
GGCCTTCCAGCAACTACAGACTGCAATATTGAAGAGAAGTTTCTGCGATTTGAGGTTAGCCAGC
ACACAGGCCGAATTCATTTGTACATATGTGTTCCAGGGCATGATTCAAGACCCAGACCACTTTT
TGAAAACTTCCTGCCAGAAGAAGTAGAGTCACCTTTATGTTCTGATAATACCATGAAAACAAGT
AATCGTCTCTTGAAGAGGGATCCTGCATTTTGCAATACGTTCAAAGCGTTCGTGAAGGAATGGT
TGGCGCTTAGACCAATTGAGCAGAAGAGACTACTGGGAAAGCCCTTACAGCTTCCCTTGAGCCT
TGAGTTGTGCTACCTGAAAGATACCAACAACCACAGCACAAAAGGGTTGCTTAAAGGAGGAAGT
AAGAGGCGTGTAACACCATGGTGTGATATTAGTAATCCTTTGCCAGAAAATGCTGAATGGAGAA
AGGTGGTTTTGCATAATGGTACAAGTAGAGAGAGAGAGTACACTCAAGGCTGGACTGTTCACGA
TGAACCTCTCTGCAAATTATGTCAAGGACCTTGCAATGGAAGGCTTGCAAAGTCACCTGAATAT
TTTGAAGACCTGTTCTGTGGTCTGCCTTGCTTCGAGGTGTTCAGATCGAGAACTAGTGGCAGGT
TTGCACGGCAGGCACTATTTGAAATTGAACATGGTATATGCTCCAAGTGTAAACTTGACTGTCA
CGAGCTTGTCAAGAATATCAGACCATTATGCAAGAAAAAGAGAGAAGAATACATTAGGAATGTT
GCTCCAAATATTGCAAGTAGATTGAAATT
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	ACTGTCACGAGCTTGTCAAGAATATCAGACCATTATGCAAGAAAAAGAGAGAAGAATACATTAG GAATGTTGCTCCAAATATTGCAAGTAGATTGAAATTattaggcgcttgaaggagcatttgttga atgaactacctcccaaacgtcgacagattatttggttgaagctgaatgcatcagatatcaagac agctatat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1949 Transcript exons: 24408850-24409042,24409906-24410102,24411015-24411116,24 411244-24411354,24411990-24412055,24412142-24412240,2441 2767-24412854,24412960-24413087,24413205-24413336,244134 12-24413501,24413631-24413939,24414467-24414651,24414741 -24414843,24414987-24415132 ATTAGGCGCTTGAAGGAGCATTTGTTGAATGAACTACCTCCCAAACGTCGACAGATTATTTGGT TGAAGCTGAATGCATCAGATATCAAGACAGCTATATCTTGTATCAAAGGGGTGAACACTAGTGA TGAGATTCCTACAATTGCCTCGCCAGACAATAGCAATGACTCTGAGGAGGTGAACATGGAAGAA GCTGATGGTTGCAAGAAATCTCCAAGGAATCTCACTACACAAGAAATTGGTATTGTGAAAATAC CTGGGTTCAGCGAGTGGTTCTTAAATCATTTCATCATGAAAGAACCAGCTGATAATGGTAGTCT GGACTCTCAGTCTAATTGCCAGAAAACAATAATTTTCGCCCATCATTTAAAGGTCCTAGATGGA GTTCAGGTGTTTGTCACAGAGCAGAGGATCAAGTATGTCCGCATTGACGGAAGCACATCTCCTA GGGAAAGGAAAGATGCTGTCGATTCTTTCCGTTTAAATCCAGAGGTAATGGTTGCAATTATTGG AATTACTGCTGGCGGTGTTGGTTTAGATTTCTCATCTGCTCAGAATGTTGTTTTCGTGGAGCTC CCAAAGTCAGCTTCAGAGTTGCTTCAGGCTGAGGATAGAGCTCATAGGCGAGGTCAAACAAATG CTGTCAACATATATATATTCTGTGCAAGGAACACATTAGATGAGTCACATTGGCTTCATTTGAA CCAGAGTCTGTTCCGTGTCTCATCATTGATGAATGGAAAGAAAGATGCTATAAGAGAGATTGAG GTTGATCAAGTTTACCACCTTGAGGAAAGCAGTAAATCTGAGGGAAAATCACAGCTTGGATTTC TTCCTTTGGAGAATCATAATGCTGATTGTGGGCATGGACCAGGAGAGAATGTAGAAAGTGATGA TATGTCCATTGAGAATTTTCCTGGCCTCAACGATATGAATTTTGAGTCAGATTTCTTCAGTATT AGGACAATTCCTCTTCACTTTGAGGATGATAGCCTTCATACGGTAATGCAAAATTGTCCATCTC CAACAGCACATGAAGAGATAGCTTTTGATAGTTCTTCTATCTCTCAAGCTTCAGTTATTTGCCC TTCAATGTCAAGCGCTAAATCAGTAAAGGCTCGTCGGAGGCTTTCTGAAATTTTTCAGACTTTA GGCCTTCCAGCAACTACAGACTGCAATATTGAAGAGAAGTTTCTGCGATTTGAGGTTAGCCAGC ACACAGGCCGAATTCATTTGTACATATGTGTTCCAGGGCATGATTCAAGACCCAGACCACTTTT TGAAAACTTCCTGCCAGAAGAAGTAGAGTCACCTTTATGTTCTGATAATACCATGAAAACAAGT AATCGTCTCTTGAAGAGGGATCCTGCATTTTGCAATACGTTCAAAGCGTTCGTGAAGGAATGGT TGGCGCTTAGACCAATTGAGCAGAAGAGACTACTGGGAAAGCCCTTACAGCTTCCCTTGAGCCT TGAGTTGTGCTACCTGAAAGATACCAACAACCACAGCACAAAAGGGTTGCTTAAAGGAGGAAGT AAGAGGCGTGTAACACCATGGTGTGATATTAGTAATCCTTTGCCAGAAAATGCTGAATGGAGAA AGGTGGTTTTGCATAATGGTACAAGTAGAGAGAGAGAGTACACTCAAGGCTGGACTGTTCACGA TGAACCTCTCTGCAAATTATGTCAAGGACCTTGCAATGGAAGGCTTGCAAAGTCACCTGAATAT TTTGAAGACCTGTTCTGTGGTCTGCCTTGCTTCGAGGTGTTCAGATCGAGAACTAGTGGCAGGT TTGCACGGCAGGCACTATTTGAAATTGAACATGGTATATGCTCCAAGTGTAAACTTGACTGTCA CGAGCTTGTCAAGAATATCAGACCATTATGCAAGAAAAAGAGAGAAGAATACATTAGGAATGTT GCTCCAAATATTGCAAGTAGATTGAAATT
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.202057499

Conservation Information
Conserved circRNAs	NA
PMCS	0.202057499

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							24409034-24408859(+)
24409036-24415095(-)
24408872-24415039(-)
						
						Potential amino acid sequence
						
							MEEADGCKKSPRNLTTQEIGIVKIPGFSEWFLNHFIMKEPADNGSLDSQSNCQKTIIFAHHLKV
LDGVQVFVTEQRIKYVRIDGSTSPRERKDAVDSFRLNPEVMVAIIGITAGGVGLDFSSAQNVVF
VELPKSASELLQAEDRAHRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNGKKDAIR
EIEVDQVYHLEESSKSEGKSQLGFLPLENHNADCGHGPGENVESDDMSIENFPGLNDMNFESDF
FSIRTIPLHFEDDSLHTVMQNCPSPTAHEEIAFDSSSISQASVICPSMSSAKSVKARRRLSEIF
QTLGLPATTDCNIEEKFLRFEVSQHTGRIHLYICVPGHDSRPRPLFENFLPEEVESPLCSDNTM
KTSNRLLKRDPAFCNTFKAFVKEWLALRPIEQKRLLGKPLQLPLSLELCYLKDTNNHSTKGLLK
GGSKRRVTPWCDISNPLPENAEWRKVVLHNGTSREREYTQGWTVHDEPLCKLCQGPCNGRLAKS
PEYFEDLFCGLPCFEVFRSRTSGRFARQALFEIEHGICSKCKLDCHELVKNIRPLCKKKREEYI
RNVAPNIASRLKLLGA*(+)
MFTSSESLLLSGEAIVGISSLVFTPLIQDIAVLISDAFSFNQIICRRLGGSSFNKCSFKRLIIS
IYLQYLEQHS*(-)
MLLQAPNNFNLLAIFGATFLMYSSLFFLHNGLIFLTSS*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	24409034-24408859(+) 24409036-24415095(-) 24408872-24415039(-)
Potential amino acid sequence	MEEADGCKKSPRNLTTQEIGIVKIPGFSEWFLNHFIMKEPADNGSLDSQSNCQKTIIFAHHLKV LDGVQVFVTEQRIKYVRIDGSTSPRERKDAVDSFRLNPEVMVAIIGITAGGVGLDFSSAQNVVF VELPKSASELLQAEDRAHRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNGKKDAIR EIEVDQVYHLEESSKSEGKSQLGFLPLENHNADCGHGPGENVESDDMSIENFPGLNDMNFESDF FSIRTIPLHFEDDSLHTVMQNCPSPTAHEEIAFDSSSISQASVICPSMSSAKSVKARRRLSEIF QTLGLPATTDCNIEEKFLRFEVSQHTGRIHLYICVPGHDSRPRPLFENFLPEEVESPLCSDNTM KTSNRLLKRDPAFCNTFKAFVKEWLALRPIEQKRLLGKPLQLPLSLELCYLKDTNNHSTKGLLK GGSKRRVTPWCDISNPLPENAEWRKVVLHNGTSREREYTQGWTVHDEPLCKLCQGPCNGRLAKS PEYFEDLFCGLPCFEVFRSRTSGRFARQALFEIEHGICSKCKLDCHELVKNIRPLCKKKREEYI RNVAPNIASRLKLLGA(+) MFTSSESLLLSGEAIVGISSLVFTPLIQDIAVLISDAFSFNQIICRRLGGSSFNKCSFKRLIIS IYLQYLEQHS(-) MLLQAPNNFNLLAIFGATFLMYSSLFFLHNGLIFLTSS*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0598300_circ_g.7

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