Detail information of Os01g0639900_circ_g.9


General Information
CircRNA Name Os01g0639900_circ_g.9
ID in PlantcircBase osa_circ_002852
Alias NA
Organism Oryza sativa
Position chr1: 25701008-25703332  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os01g0639900
Parent gene annotation beta-carbonic anhydrase (EC:4.2.1.1), Carbon assimilation, COb>2-mediated stomatal pore response (Os01t0639900-01)
Parent gene strand +
Alternative splicing Os01g0639900_circ_g.1 Os01g0639900_circ_g.2 Os01g0639900_circ_g.3 Os01g0639900_circ_g.4 Os01g0639900_circ_g.5 Os01g0639900_circ_g.6 Os01g0639900_circ_g.7 Os01g0639900_circ_g.8 Os01g0639900_circ_g.10 Os01g0639900_circ_g.11 Os01g0639900_circ_g.12 Os01g0639900_circ_g.13 Os01g0639900_circ_g.14 Os01g0639900_circ_g.15 Os01g0639900_circ_g.16 Os01g0639900_circ_g.17 Os01g0639900_circ_g.18 Os01g0639900_circ_g.19 Os01g0639900_circ_g.20 Os01g0639900_circ_g.21 Os01g0639900_circ_g.22 Os01g0639900_circ_g.23 Os01g0639900_circ_g.24 Os01g0639900_circ_g.25 Os01g0639900_circ_g.26 Os01g0639900_circ_g.27 Os01g0639900_circ_g.28 Os01g0639900_circ_g.29 Os01g0639900_circ_g.30 Os01g0639900_circ_g.31 Os01g0639900_circ_g.32 Os01g0639900_circ_g.33 Os01g0639900_circ_g.34 Os01g0639900_circ_g.35
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGCTAATCGCCTAATCCTAATATGCTTATTGATCTCCTGATATGGCTGTGTAATCGCAAAATT
ACTACTCCACTACTAGTTAGTGTGGAGTAATGAACTgtacgctgctccgtccatttcctgctca
aaatttgttcttctttgtctactagtgagccaacccagccagctggagttttacggttactcct
ccatggcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 2325
Transcript exons: 25701008-25703332
GTACGCTGCTCCGTCCATTTCCTGCTCAAAATTTGTTCTTCTTTGTCTACTAGTGAGCCAACCC
AGCCAGCTGGAGTTTTACGGTTACTCCTCCATGGCCGCTACACCGTCCATCCCTCAGCTCGCAA
ACCTCGTCAGCAAAAGAAAAGCCCCAACCTTTTACCCCCGATCTCTGCGGTTGATTTGGGGATT
CGTGAACACACCTTGGCCCACAGATTCCTACCGGTCTAGATACTACTGCTACTCCCAGGTAGAA
AGTACACGCATGCTTGCAACCTGCAAGCAAGGCAACCAGGCAAAGCATATAGCCTTGTGTTTGC
CCATCCGGTGTACACTGTTTACGGTGCCCACAGCATATATGGCCATCAAGGTCAAACTGGACAA
AAGTTAGCAGCAACTGGCCTGTCCAAGTTGCCTGGCCAAAGTTATATAAGAGGATGAACAGCTT
GTCGCCGGCCTGTTAGGCCGGGGCTGGCTGATCAGTTATATACGAGGATATGATAAGTACAACC
AAGATTATAAAAAGAGAGAGGGAGATTAGATTAGATTAGAATGCTCCATTTGGCAGGCGTACGC
AGCGCAATCTTAATTAGTAGCTCGGGTATTGGTAGGCCAGGCAAAGAAGCTGCTGTAGTAGTGG
AAATCCTTCCTCATAATGCACGCACCCACCACCGAAGAAGACGAGGCTCGCACCTAGTAACATG
CAGGATTTCTTCACCGTCCCCCATGTGCTTGCCCATGTTGTGTTTCCGCCGAGATGTCGCCTTC
CTCGTATAGGGTTTAGCATCCATCATCACTACTGTTTTCCTTTTGATTTCTTCGTTGCGTCCAG
CTTAATTTTAGAATAGTAAGAGCAAGTTTAATAGTACAGCCAACTACTAACTCCAATTCATATA
TAGCTAATCTAGAAACTCATTCATACAATAGTTACATACTACACTACTAATACCTGATCCCACC
TGTCATACACACACTGTGTCTTGGAGTCCGTGCTAGAGCTGGCTACAAATTTATAGCCCACTGC
TTTTCTCTCTTTTTATTTAGCTTCTTAAAATATGTTTACAGCTAGCTTATAGCATGCTATTGTA
CATGCTCTAATAAGCTAATTAGGTCGTCGATCGAGGCTAGGGTCTCCTGGCAGCGCCTCGGTCT
AAATTGGCGTACGTCGTCCTAACATTTGGGTACAAAAATTTGGACCGGCCGGCAACCTCGCTGT
ACGTGTTGATGAATTTCAAAGTTCATTTGGACACGGCCATTCTCATGGGGATACTGCAATGATG
CCCAAATTAATTTGGGCGATATCATCGTCTTTGCTGACCCCACACAAGCTAGAACGTACCGTGA
ACCACAAGTTCTCTTTTGTTTATAGCAACGGAGAAGAAAGAAACAGTGGATAAAGCCTTGCAGC
TTGATATACTCCATACTATAGCTGTAGCTAAGCAAAAGTATTTCCTGTACGACATGGCCCGGAG
GACATCACATAATTGTGGGCCCAGCAATCACGCATTTGTTTGCACGTCCAACTCAACAGCCTTT
AACGAAAGTTTAGGCGCATATCCAACCTTTTGCTTACACTACATTTTGGCATCTGCCTCGCTAT
ACAGTAACTTGGATTGGCCAGCCACACGCATTGATGAGCAGGTGCAAAAGTCCAGCAGTTTGCA
TTACAACATGCGTACATATATACTTTATTAATATCAAATCTCCTCTCCCGGAAAATGATGGCCC
CCATCCAAAAACATTAATCTACGCCGCAACTGACTGCCTGCTGCTGCTGCTGCCGTAAGCCCGT
AATCGATCGGCCCCGGCAATTTGCTAAAGGGTGGGGCCTGATCGCCATGAGCATGCTTTGGATG
CGTCAGCTCGCGTCTTAATCTAATGCTCGGTTATTTGGCCGTTTTTGTCTCCGTCGGCGTTGTC
GCCAGTGGGATCGTTAGTTCATTAGGATTAGTACTAATCAGCGCAACAGTTATATGCCCCCCAT
GGGCCATGAACTCATACTCGTCCGTGTCGTGGGTTATCCTTGCGTATCCGTTCTGTTTTCTGGG
TGGAAAAAGTGGTCAGGGAAAACAGAGCAGACAGGTCAAAAAGCTGGCAGCTTTGGGGGCAAGA
GAACGGGAAAAAAATGTCAGATTCCTGTGGGGGTTGTGGGCACTCGGATACGCCTATCAGCATC
TGCTGCCTCCTTATCGATAAGAGCAGTAGTGGTAGTACTAGTAGAACAGATGCTAATCGCCTAA
TCCTAATATGCTTATTGATCTCCTGATATGGCTGTGTAATCGCAAAATTACTACTCCACTACTA
GTTAGTGTGGAGTAATGAACT

Genomic sequence GTACGCTGCTCCGTCCATTTCCTGCTCAAAATTTGTTCTTCTTTGTCTACTAGTGAGCCAACCC
AGCCAGCTGGAGTTTTACGGTTACTCCTCCATGGCCGCTACACCGTCCATCCCTCAGCTCGCAA
ACCTCGTCAGCAAAAGAAAAGCCCCAACCTTTTACCCCCGATCTCTGCGGTTGATTTGGGGATT
CGTGAACACACCTTGGCCCACAGATTCCTACCGGTCTAGATACTACTGCTACTCCCAGGTAGAA
AGTACACGCATGCTTGCAACCTGCAAGCAAGGCAACCAGGCAAAGCATATAGCCTTGTGTTTGC
CCATCCGGTGTACACTGTTTACGGTGCCCACAGCATATATGGCCATCAAGGTCAAACTGGACAA
AAGTTAGCAGCAACTGGCCTGTCCAAGTTGCCTGGCCAAAGTTATATAAGAGGATGAACAGCTT
GTCGCCGGCCTGTTAGGCCGGGGCTGGCTGATCAGTTATATACGAGGATATGATAAGTACAACC
AAGATTATAAAAAGAGAGAGGGAGATTAGATTAGATTAGAATGCTCCATTTGGCAGGCGTACGC
AGCGCAATCTTAATTAGTAGCTCGGGTATTGGTAGGCCAGGCAAAGAAGCTGCTGTAGTAGTGG
AAATCCTTCCTCATAATGCACGCACCCACCACCGAAGAAGACGAGGCTCGCACCTAGTAACATG
CAGGATTTCTTCACCGTCCCCCATGTGCTTGCCCATGTTGTGTTTCCGCCGAGATGTCGCCTTC
CTCGTATAGGGTTTAGCATCCATCATCACTACTGTTTTCCTTTTGATTTCTTCGTTGCGTCCAG
CTTAATTTTAGAATAGTAAGAGCAAGTTTAATAGTACAGCCAACTACTAACTCCAATTCATATA
TAGCTAATCTAGAAACTCATTCATACAATAGTTACATACTACACTACTAATACCTGATCCCACC
TGTCATACACACACTGTGTCTTGGAGTCCGTGCTAGAGCTGGCTACAAATTTATAGCCCACTGC
TTTTCTCTCTTTTTATTTAGCTTCTTAAAATATGTTTACAGCTAGCTTATAGCATGCTATTGTA
CATGCTCTAATAAGCTAATTAGGTCGTCGATCGAGGCTAGGGTCTCCTGGCAGCGCCTCGGTCT
AAATTGGCGTACGTCGTCCTAACATTTGGGTACAAAAATTTGGACCGGCCGGCAACCTCGCTGT
ACGTGTTGATGAATTTCAAAGTTCATTTGGACACGGCCATTCTCATGGGGATACTGCAATGATG
CCCAAATTAATTTGGGCGATATCATCGTCTTTGCTGACCCCACACAAGCTAGAACGTACCGTGA
ACCACAAGTTCTCTTTTGTTTATAGCAACGGAGAAGAAAGAAACAGTGGATAAAGCCTTGCAGC
TTGATATACTCCATACTATAGCTGTAGCTAAGCAAAAGTATTTCCTGTACGACATGGCCCGGAG
GACATCACATAATTGTGGGCCCAGCAATCACGCATTTGTTTGCACGTCCAACTCAACAGCCTTT
AACGAAAGTTTAGGCGCATATCCAACCTTTTGCTTACACTACATTTTGGCATCTGCCTCGCTAT
ACAGTAACTTGGATTGGCCAGCCACACGCATTGATGAGCAGGTGCAAAAGTCCAGCAGTTTGCA
TTACAACATGCGTACATATATACTTTATTAATATCAAATCTCCTCTCCCGGAAAATGATGGCCC
CCATCCAAAAACATTAATCTACGCCGCAACTGACTGCCTGCTGCTGCTGCTGCCGTAAGCCCGT
AATCGATCGGCCCCGGCAATTTGCTAAAGGGTGGGGCCTGATCGCCATGAGCATGCTTTGGATG
CGTCAGCTCGCGTCTTAATCTAATGCTCGGTTATTTGGCCGTTTTTGTCTCCGTCGGCGTTGTC
GCCAGTGGGATCGTTAGTTCATTAGGATTAGTACTAATCAGCGCAACAGTTATATGCCCCCCAT
GGGCCATGAACTCATACTCGTCCGTGTCGTGGGTTATCCTTGCGTATCCGTTCTGTTTTCTGGG
TGGAAAAAGTGGTCAGGGAAAACAGAGCAGACAGGTCAAAAAGCTGGCAGCTTTGGGGGCAAGA
GAACGGGAAAAAAATGTCAGATTCCTGTGGGGGTTGTGGGCACTCGGATACGCCTATCAGCATC
TGCTGCCTCCTTATCGATAAGAGCAGTAGTGGTAGTACTAGTAGAACAGATGCTAATCGCCTAA
TCCTAATATGCTTATTGATCTCCTGATATGGCTGTGTAATCGCAAAATTACTACTCCACTACTA
GTTAGTGTGGAGTAATGAACT
Conservation Information
Conserved circRNAs NA
PMCS 0.32310944
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017