Detail information of Os01g0639900_circ_g.3


General Information
CircRNA Name Os01g0639900_circ_g.3
ID in PlantcircBase osa_circ_040545
Alias NA
Organism Oryza sativa
Position chr1: 25700320-25704931  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRI-long
Parent gene Os01g0639900
Parent gene annotation beta-carbonic anhydrase (EC:4.2.1.1), Carbon assimilation, COb>2-mediated stomatal pore response (Os01t0639900-01)
Parent gene strand +
Alternative splicing Os01g0639900_circ_g.1 Os01g0639900_circ_g.2 Os01g0639900_circ_g.4 Os01g0639900_circ_g.5 Os01g0639900_circ_g.6 Os01g0639900_circ_g.7 Os01g0639900_circ_g.8 Os01g0639900_circ_g.9 Os01g0639900_circ_g.10 Os01g0639900_circ_g.11 Os01g0639900_circ_g.12 Os01g0639900_circ_g.13 Os01g0639900_circ_g.14 Os01g0639900_circ_g.15 Os01g0639900_circ_g.16 Os01g0639900_circ_g.17 Os01g0639900_circ_g.18 Os01g0639900_circ_g.19 Os01g0639900_circ_g.20 Os01g0639900_circ_g.21 Os01g0639900_circ_g.22 Os01g0639900_circ_g.23 Os01g0639900_circ_g.24 Os01g0639900_circ_g.25 Os01g0639900_circ_g.26 Os01g0639900_circ_g.27 Os01g0639900_circ_g.28 Os01g0639900_circ_g.29 Os01g0639900_circ_g.30 Os01g0639900_circ_g.31 Os01g0639900_circ_g.32 Os01g0639900_circ_g.33 Os01g0639900_circ_g.34 Os01g0639900_circ_g.35
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os01t0639900-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGTACTACCTGAGGATATCGTCCCCGATCATCGATGTGAACGCGTGGAGTACTACTACGTACG
TACCGGATGGTTCGATATATGTGAATGCTGTATTAAcagcggcgacgaagccgtccatagattc
ttcttcctccccgtcactcctcaccaacaaccatcccccaccctccaaggtccgtccccctgtc
tcctcctc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 837
Transcript exons: 25700320-25700396,25700780-25700841,25700959-25701007,25
703358-25703474,25703597-25703650,25704105-25704190,2570
4350-25704455,25704646-25704931
CAGCGGCGACGAAGCCGTCCATAGATTCTTCTTCCTCCCCGTCACTCCTCACCAACAACCATCC
CCCACCCTCCAAGATGGACGCCGCCGTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACC
GAGTTCTATGACAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGTACA
TGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATGGGCCTGGAGCCCGGCGA
GGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGATCAAGCACGCTGGC
GTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTCAAGGTCGAACTCATCGTGGTGATTGGCC
ACAGCCGCTGCGGTGGAATCAAGGCCCTCCTCTCACTCAAGGATGGAGCACCAGACTCCTTCCA
CTTCGTCGAGGACTGGGTCAGGACCGGTTTCCCCGCCAAGAAGAAGGTTCAGACCGAGCACGCC
TCGCTGCCTTTCGATGACCAATGCGCCATCTTGGAGAAGGAGGCCGTGAACCAATCCCTGGAGA
ACCTCAAGACCTACCCGTTCGTCAAGGAGGGGATCGCCAACGGCACCCTCAAGCTCGTCGGCGG
CCACTACGACTTCGTCTCCGGCAACTTGGACTTATGGGAGCCCTAAATCCGACCGTCCGTCCGT
TCAGTTCGTCAGTTTACGCCAACGCTTTTGCATAAGTACTACCTGAGGATATCGTCCCCGATCA
TCGATGTGAACGCGTGGAGTACTACTACGTACGTACCGGATGGTTCGATATATGTGAATGCTGT
ATTAA

Genomic sequence CAGCGGCGACGAAGCCGTCCATAGATTCTTCTTCCTCCCCGTCACTCCTCACCAACAACCATCC
CCCACCCTCCAAGGTCCGTCCCCCTGTCTCCTCCTCCTCCCGCACCATCCGTCAATACAGTTAC
TGCTCTCATCATCATCCATCCATCCTCTTCTCCTCTCTCTCTCCTTTTCTTGATTCATCCGTCG
ATCGATTCGCGCGGGCGTGGCTTCCTTTTTTGTTGGGCAAAGAGAAAAAAAAGGGAGATCCTTT
GCATCCGCTTTAGATCGCCTTTTGTGCATGCCTCGCGTGGGCGCAGGGAACCCACAACGACGGC
GATATCCTCCTCTCTCGCATATTTTCATGATGCATATGGGTGTATAAAAATTTTCACGCGTTTT
TGTGTGCGTGTGTTCTTGGTTTGGGATTGGGATGGCATGAGAGCTGATCGGTGTGATTAATTAT
TTTTGCTTGCAGATGGACGCCGCCGTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCG
AGTTCTATGAGTAAGCCCCCCTTGCCTATAGATGGTTAATTTGAGAAGAATTTGGGTAGCCGCG
CGCGCGGCGTGAGATGAAACTGACATGATCACCTTGCTGTTTGTCTTTTTGTCTCCTCCGCAGC
AAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGGTACGCTGCTCCGTCC
ATTTCCTGCTCAAAATTTGTTCTTCTTTGTCTACTAGTGAGCCAACCCAGCCAGCTGGAGTTTT
ACGGTTACTCCTCCATGGCCGCTACACCGTCCATCCCTCAGCTCGCAAACCTCGTCAGCAAAAG
AAAAGCCCCAACCTTTTACCCCCGATCTCTGCGGTTGATTTGGGGATTCGTGAACACACCTTGG
CCCACAGATTCCTACCGGTCTAGATACTACTGCTACTCCCAGGTAGAAAGTACACGCATGCTTG
CAACCTGCAAGCAAGGCAACCAGGCAAAGCATATAGCCTTGTGTTTGCCCATCCGGTGTACACT
GTTTACGGTGCCCACAGCATATATGGCCATCAAGGTCAAACTGGACAAAAGTTAGCAGCAACTG
GCCTGTCCAAGTTGCCTGGCCAAAGTTATATAAGAGGATGAACAGCTTGTCGCCGGCCTGTTAG
GCCGGGGCTGGCTGATCAGTTATATACGAGGATATGATAAGTACAACCAAGATTATAAAAAGAG
AGAGGGAGATTAGATTAGATTAGAATGCTCCATTTGGCAGGCGTACGCAGCGCAATCTTAATTA
GTAGCTCGGGTATTGGTAGGCCAGGCAAAGAAGCTGCTGTAGTAGTGGAAATCCTTCCTCATAA
TGCACGCACCCACCACCGAAGAAGACGAGGCTCGCACCTAGTAACATGCAGGATTTCTTCACCG
TCCCCCATGTGCTTGCCCATGTTGTGTTTCCGCCGAGATGTCGCCTTCCTCGTATAGGGTTTAG
CATCCATCATCACTACTGTTTTCCTTTTGATTTCTTCGTTGCGTCCAGCTTAATTTTAGAATAG
TAAGAGCAAGTTTAATAGTACAGCCAACTACTAACTCCAATTCATATATAGCTAATCTAGAAAC
TCATTCATACAATAGTTACATACTACACTACTAATACCTGATCCCACCTGTCATACACACACTG
TGTCTTGGAGTCCGTGCTAGAGCTGGCTACAAATTTATAGCCCACTGCTTTTCTCTCTTTTTAT
TTAGCTTCTTAAAATATGTTTACAGCTAGCTTATAGCATGCTATTGTACATGCTCTAATAAGCT
AATTAGGTCGTCGATCGAGGCTAGGGTCTCCTGGCAGCGCCTCGGTCTAAATTGGCGTACGTCG
TCCTAACATTTGGGTACAAAAATTTGGACCGGCCGGCAACCTCGCTGTACGTGTTGATGAATTT
CAAAGTTCATTTGGACACGGCCATTCTCATGGGGATACTGCAATGATGCCCAAATTAATTTGGG
CGATATCATCGTCTTTGCTGACCCCACACAAGCTAGAACGTACCGTGAACCACAAGTTCTCTTT
TGTTTATAGCAACGGAGAAGAAAGAAACAGTGGATAAAGCCTTGCAGCTTGATATACTCCATAC
TATAGCTGTAGCTAAGCAAAAGTATTTCCTGTACGACATGGCCCGGAGGACATCACATAATTGT
GGGCCCAGCAATCACGCATTTGTTTGCACGTCCAACTCAACAGCCTTTAACGAAAGTTTAGGCG
CATATCCAACCTTTTGCTTACACTACATTTTGGCATCTGCCTCGCTATACAGTAACTTGGATTG
GCCAGCCACACGCATTGATGAGCAGGTGCAAAAGTCCAGCAGTTTGCATTACAACATGCGTACA
TATATACTTTATTAATATCAAATCTCCTCTCCCGGAAAATGATGGCCCCCATCCAAAAACATTA
ATCTACGCCGCAACTGACTGCCTGCTGCTGCTGCTGCCGTAAGCCCGTAATCGATCGGCCCCGG
CAATTTGCTAAAGGGTGGGGCCTGATCGCCATGAGCATGCTTTGGATGCGTCAGCTCGCGTCTT
AATCTAATGCTCGGTTATTTGGCCGTTTTTGTCTCCGTCGGCGTTGTCGCCAGTGGGATCGTTA
GTTCATTAGGATTAGTACTAATCAGCGCAACAGTTATATGCCCCCCATGGGCCATGAACTCATA
CTCGTCCGTGTCGTGGGTTATCCTTGCGTATCCGTTCTGTTTTCTGGGTGGAAAAAGTGGTCAG
GGAAAACAGAGCAGACAGGTCAAAAAGCTGGCAGCTTTGGGGGCAAGAGAACGGGAAAAAAATG
TCAGATTCCTGTGGGGGTTGTGGGCACTCGGATACGCCTATCAGCATCTGCTGCCTCCTTATCG
ATAAGAGCAGTAGTGGTAGTACTAGTAGAACAGATGCTAATCGCCTAATCCTAATATGCTTATT
GATCTCCTGATATGGCTGTGTAATCGCAAAATTACTACTCCACTACTAGTTAGTGTGGAGTAAT
GAACTGAGCTGATTGTTGGGACAAATGCAGTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGT
GCCCGTCGGTGACCATGGGCCTGGAGCCCGGCGAGGCCTTCACCGTCCGCAACATCGCCAACAT
GGTCCCAGCTTACTGCAAGGTAACCAACTTCATCGTACGCGTTTTCGTCGCCGGCCGGTCGATT
GGTAAGCTAGCTATTCCGGTCGGTCGCCGCGGTTTGCATTGATTTTGACCCCCCTCGTGTGTGT
GCGTCAACTGCAGATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
AAGGTCAACTCTCTCTCTCTCTCTCTCACAGATAGTGCTCTATTATGTCAACTATATAGTACCC
GTTGCTCTAATTGTGCCGGCAACTTCACACACCGGATCAGAGAAAAATATTTTCGTACAGGCTG
AGAAAAATGGGTCGTGTCTGACGCCAGATGGTGTGTGAATTATTTTATTGATCAAGAAGAATCT
TCCCTTCCCCACATAATCCATCCAGCTTAGGTTTATGTAGGGTGTGTAACATTCATGGTGAAGG
TGGTACTTGCGTTACATATGAATCTTGTCAAATCAAGCAGGGAGCATAATTAGCGCCTTTGTTT
AGTATATTTGGACGGTGTTAGTAGGAAAGCACCGTACTTTGGTGAAATCTATTTTATGCTCATA
CAGCACATGTATGCGTAAAGTGTGCGTGCACGATTTGATTGTGGGGTATTGACCTGGATCGAAT
AATCTGCAGGTCGAACTCATCGTGGTGATTGGCCACAGCCGCTGCGGTGGAATCAAGGCCCTCC
TCTCACTCAAGGATGGAGCACCAGACTCCTTGTAAGTTGCTGAACAAAAGAAAACTTAGTGATA
GTACTATAGTATTGGCAACTTGGGCATAACTGTATGCAGACAAACAAAGGGTTGAAGAAATAAA
AATGTTAGCGTGTCTTGATCATCGTTTGTTTCTGACTCGGGTTTGCACTTTGATTGGTTCAGCC
ACTTCGTCGAGGACTGGGTCAGGACCGGTTTCCCCGCCAAGAAGAAGGTTCAGACCGAGCACGC
CTCGCTGCCTTTCGATGACCAATGCGCCATCTTGGAGAAGGTAACGCACGTACTAGTAGCATGA
CAACCACTATGCATAAATCAAAATGTTAAATGAAATTGGAACATCAGAATTAATTACATTCATA
GGAAGGACAATCGAACTGTCTGAAACTTGCGTTGTCTATTCAATTCAGCACTGACTGAATTTCT
GCGTCCCTGATCAAAACAATTGATCTGATGATCTGCAGGAGGCCGTGAACCAATCCCTGGAGAA
CCTCAAGACCTACCCGTTCGTCAAGGAGGGGATCGCCAACGGCACCCTCAAGCTCGTCGGCGGC
CACTACGACTTCGTCTCCGGCAACTTGGACTTATGGGAGCCCTAAATCCGACCGTCCGTCCGTT
CAGTTCGTCAGTTTACGCCAACGCTTTTGCATAAGTACTACCTGAGGATATCGTCCCCGATCAT
CGATGTGAACGCGTGGAGTACTACTACGTACGTACCGGATGGTTCGATATATGTGAATGCTGTA
TTAA
Conservation Information
Conserved circRNAs NA
PMCS 0.094671663
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study