Detail information of BGIOSGA031581_circ_g.6


General Information
CircRNA Name BGIOSGA031581_circ_g.6
ID in PlantcircBase osi_circ_002896
Alias 10:18411754|18412756
Organism Oryza sativa ssp. indica
Position chr10: 18411754-18412756  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA031581
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031581_circ_g.5 BGIOSGA031581_circ_g.7
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA031581-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTTCAGAATTACCTTCACATCCCCTGCTGCAGAATTTTTTTCATCCTTCTTTTGCCATCCAAC
AGAAATACTTGAGTCTGTACCAAGGGCAAGCTGTATctggattcctatattatagatcatcctt
acagtactgaactcagatatccgccttcctcctccaatttcaaaatcaagggccgtgctgcaag
aaaacagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGATTCCTATATTATAGATCATCCTTACAGTACTGAACTCAGATATCCGCCTTCCTCCTCCA
ATTTCAAAATCAAGGGCCGTGCTGCAAGAAAACAGTTCAAGAGAGAGGAATAGGGGTTACAAAC
TCATGTAATGGCTTTCAAAAAATGCAATACGGCCATACATAAGTGAAATCAAATAGTATACACC
TTCCAACTCGACCAGCACGCGACCATGAGACTTGGTGGAGAAATAACGGGTGTAATGAGCAGAT
GCACCAAAATAATTAGTACCAAGCTGGAAAGAAAAAGGTTAGGTTGTTAATACAAGTCCTCAAA
AAGCCAGCATCGGATAGTTGCCTGATGTAAGAAAGTGAAACTATCTATAAAACACTTAGTTCTT
GAAGGCATTACGTCAGGTATATATATTATAATCACTGTGAAGCCTGTTTTTCACAATTTATCAG
AGATGTAACTTTCTCAATTTTCAAGGCCCTACAGTCCTACACAGAATAGGTGCTGTTAATTTAG
TGATGAGATTGCTTGGAAAATTGAATGACCTTCCAGATATCTGTAAGTACTAATGAACCATATG
GCAACCATGGGGAGCTGGTTACTTTAGCTGCTGATTGCTTAGAAACACTCCTATACTAACTACT
GTGCTAGCTTCAGAAGTAAGAACACAGCGGCGAACTTATAATAGATGCTGTAACTACACCTCCT
CGGAAGTGTCATGGATAAAAGTACACAGGGCACTGTTTTGAAAGAAAATAAAACCGTGAATTCT
ACAGAACGAAACAACATGAAGCTACGTGCTACTAAAAATGAATCCAACCAGGCAATGTAGATGT
TGCGAGGGCATAGAATGGCAAGTACTTCAAATTCCAAACAGATATGTCAACTCTTAGCTGATAA
CAGAGTTGTTTCAGAATTACCTTCACATCCCCTGCTGCAGAATTTTTTTCATCCTTCTTTTGCC
ATCCAACAGAAATACTTGAGTCTGTACCAAGGGCAAGCTGTAT
Conservation Information
Conserved circRNAs osa_circ_007602*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021