Detail information of Os10g0507800_circ_g.1


General Information
CircRNA Name Os10g0507800_circ_g.1
ID in PlantcircBase osa_circ_007602
Alias Os_ciR1563
Organism Oryza sativa
Position chr10: 19435104-19436109  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene Os10g0507800
Parent gene annotation Similar to chaperone protein dnaJ 13. (Os10t0507800-01);Similar
to Chaperone protein dnaJ 13. (Os10t0507800-02)
Parent gene strand -
Alternative splicing NA
Support reads 11/3
Tissues root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0507800-02:3
Os10t0507800-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTTCAGAATTACCTTCACATCCCCTGCTGCAGAATTTTTTTCATCCTTCTTTTGCCATCCAAC
AGAAATACTTGAGTCTGTACCAAGGGCAAGCTGTATctggattcctatattatagatcatcctt
acagtactgaactcagatatccgccttcctcctccaatttcaaaatcaagggccgtgctgcaag
aaaacagt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 261
Transcript exons: 19435104-19435188,19435295-19435383,19436023-19436109
CTGGATTCCTATATTATAGATCATCCTTACAGTACTGAACTCAGATATCCGCCTTCCTCCTCCA
ATTTCAAAATCAAGGGCCGTGCTTCCAACTCGACCAGCAACGCGACCATGAGACTTGGTGGAGA
AATAACGGGTGTAATGAGCAGATGCACCAAAATAATTAGTACCAAGCTTCACATCCCCTGCTGC
AGAATTTTTTTCATCCTTCTTTTGCCATCCAACAGAAATACTTGAGTCTGTACCAAGGGCAAGC
TGTAT

Genomic sequence CTGGATTCCTATATTATAGATCATCCTTACAGTACTGAACTCAGATATCCGCCTTCCTCCTCCA
ATTTCAAAATCAAGGGCCGTGCTGCAAGAAAACAGTTCAAGAGAGAGGAATAGGGGTTACAAAC
TCATGTAATGGCTTTCAAAAAATGCAATACGGCCATACATAAGTGAAATCAAATAGTATACACC
TTCCAACTCGACCAGCAACGCGACCATGAGACTTGGTGGAGAAATAACGGGTGTAATGAGCAGA
TGCACCAAAATAATTAGTACCAAGCTGGAAAGAAAAAGGCTAGGTTGTTAATACAAGTCCTCAA
AAAGCAAGCATCGGATAGTTGCCTGATGTAAGAAAGTGAAACAATCTATAAAACAATTAGTTCT
TGAAGGCATTACAGTCAAGGTATATATATTATAATCACTGTGAAGCCTGTTTTTCACAATTTAT
CAGAGATGTAACTTTCTCAATTTTCAAGGCCCTACAGTCCTACACAGAATAGGTGCTGTTAATT
TAGTGATGAGATTGCTTGGAAAATTGAATGACCTTCCAGATATCTGTAAGTACTAATGAACCAT
ATGGCAACCATGGGGAGCTGGTTACTTTAGCTGCTGATTGCTTAGAAACACTCCTATACTAACT
ACTGTGCTAGCTTCAGAAGTAAGAACACAGCGGCGAACTTATAATAGATGCTGTAACTACACCT
CCTCGGAAGTGTCATGGATAAAAGTACACAGGGCACTGTTTTGAAAGAAAATAAAACCGTGAAT
TCTACAGAACGAAACAACATGAAGCTACGTGCTACTAAAAATGAATCCAACCAGGCAATGTAGA
TGTTGCGAGGGCATAGAATGGCAAGTACTTCAAATTCCAAACAGATATGTCAACTCTTAGCTGA
TAACAGAGTTGTTTCAGAATTACCTTCACATCCCCTGCTGCAGAATTTTTTTCATCCTTCTTTT
GCCATCCAACAGAAATACTTGAGTCTGTACCAAGGGCAAGCTGTAT
Conservation Information
Conserved circRNAs osi_circ_002896* osi_circ_008586
PMCS 0.24451776
Functional Information
Coding potential Y
Potential coding position 19435129-19435106(-)
Potential amino acid sequence MIYNIGIQIQLALGTDSSISVGWQKKDEKNSAAGDVKLGTNYFGASAHYTRYFSTKSHGRVAGR
VGSTALDFEIGGGRRISEFSTVRMIYNIGIQIQLALGTDSSISVGWQKKDEKNSAAGDVKLGTN
YFGASAHYTRYFSTKSHGRVAGRVGSTALDFEIGGGRRISEFSTVRMIYNIGIQIQLALGTDSS
ISVGWQKKDEKNSAAGDVKLGTNYFGASAHYTRYFSTKSHGRVAGRVGSTALDFEIGGGRRISE
FSTVRMIYNIGIQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017