Detail information of Os01g0321300_circ_g.3


General Information
CircRNA Name Os01g0321300_circ_g.3
ID in PlantcircBase osa_circ_001540
Alias NA
Organism Oryza sativa
Position chr1: 12240772-12243826  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os01g0321300
Parent gene annotation Similar to Protein translocase subunit secA. (Os01t0321300-00)
Parent gene strand -
Alternative splicing Os01g0321300_circ_g.4 Os01g0321300_circ_g.5 Os01g0321300_circ_g.6 Os01g0321300_circ_g.7 Os01g0321300_circ_g.8 Os01g0321300_circ_g.9 Os01g0321300_circ_g.10 Os01g0321300_circ_g.11 Os01g0321300_circ_g.12 Os01g0321300_circ_g.13 Os01g0321300_circ_g.14 Os01g0321300_circ_g.15 Os01g0321300_circ_g.16 Os01g0321300_circ_g.17 Os01g0321300_circ_g.18
Support reads 1
Tissues shoot
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0321300-00:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGATAACTTATTGACGCAAGGGTAATTGTTTCATTTTGTATAGGTACACCTTCTTTAGCTTC
AATTGCTTGGTGAAGACCATCACTCCATCTTCTGCCcttctcacatgagtaggagagccgctct
tcagcttctagctcggtcaatgatttttctccccaggctttgacagccacttcaacagactctt
taacatat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTCACATGAGTAGGAGAGCCGCTCTTCAGCTTCTAGCTCGGTCAATGATTTTTCTCCCCAG
GCTTTGACAGCCACTTCAACAGACTCTTTAACATATGATAGTGCGTCTTTTGAAAGTTCACATG
GGAACAAACTTTCATTTGTCTGAGAAAGGGGGCAGATGCAATAAGTAAAAGCACCATCAATTTA
TCGCAACTAAAATCATAACCCAACTATCTGAAGAATAAAGCTCAGAATCGTGATATTCAATTCG
CATTAATTCACATAAAAGGTGATAATTAGAGATATAGTTCATTATGTACCTTCCATGTCTTCTT
AGGTGAGGCCTGCTTTTTAGATATAATGACACCATCCAATGGATCAACAACTCTGAAACATGAT
GCCAGAATCAGAAGTAAATATAAGCAGTGATGCGAACATGTTGAGAACAGTACAGTTCAATTCC
AGTTCTGTACTAGAGAACAATGGTCACATTAGGTGTATTGACAGAATCAAATGAATGAAATCAA
AAGAACCATAATGTCAACATGCCATTTCTAGGAAAGTTCGTCAAAATAGGAGGTAGGTCCATTG
CAGCTTCCAACTCATTCAAGCGGGTGAAATCAATCTGAAGGTTGTGTTAACACTAATAAAATCA
GAAGAGTTGCAATCCTTTAAGGTTCACTGGGTATGGGTACGTTGGCAGGTGAGCAGGTCACACT
AAGTCACTGTAAAACACCACAAAAGATCTTACCAGTAGTCGCAGCATGGTTTCTCTGGTGGTTA
CATATATGTTGAAATCTTGTTATACCGCCTCTAGTAATATACCACTTACGTTTAATTTATAAGC
TGAAATCCAGTTAATTCATGTCATTCTAGTTATATTTATTTTTTGGTGGAACTAGTGCAAGCAA
CAGGCATGCAAGTAAATAAAGAACTGAATCAATACTTGTTTTTGTTAGAAAACAGTCAGGAGCA
GCATATCTGGTGTCATTTGAAATTCTGACAATAAAATTAAATACCTTGGCATAAGCATCTCACG
CAGCTTCAACCTTGCCATGAATTCTGCATTTCCTCCAAGAATAATATCAGTACCACGTCCCGCC
ATATTGGTGGCAATTGTCACTGCACCAAGGCGTCCACTCTGAGCTACAATTTCTGCCTCCCTCT
CTACATTCTCTGGTTTAGCATTGAGGACCTACAGTACAAATTCAAAGTAAAACTTGAGACGATT
TTCGATGTGTTAGGAAATGAAATCATGAGCTTGTGGCTTCCAAAGTTTGAAGCACATAATCAGA
AGGCTAGCATAAATGCTTCTCAGATAGTTCCTTTTTCTATTGCAGTTAAGCTGTAGTCTTGAGA
TGGTATAGGGTAGCTGGGGTAGAGAGGGAATAAGACGGCAGCAGCAGAAGAGGCTTCCACAAAG
AAACAAGGAACATGCAAATGCATAGAATATAGAGAGTGAGGGGTTAACTGATTTCTATTCCTGT
GCCGTGTACCACAATCGATACTGGGTTGCCTTGATCCTCGGCCCCTTAGCACAACGCCCATGAC
AGCATGTGTACTGTACTACTGTTCACAGAACAGTATCGCAGCCCATAGCATGTCATTCATCACC
TTCCTACTAATATTCATCTACTCCAGCTGCGACTCAAGCACTAATTTATCTTGGGCAAAAACTT
GGGTGGGTGCTAAATAACCTACAGATGGAATGCAAGTAGCAAAAGTTTGCTCTGAAACATCAAC
CAAGCTACACATTAATGCACAAAACTCTTTTTTGTGGTGTATGGGGTATGAGAATGCAAAGATC
AGTATTCTTGTTATAGCATTGCACTAAATGGAAAGTAGCTGAATATTTACTGTTTTTAAGACAA
GAGGCCAAAGGGCCAGCTTTTAATTGAAAGCCAACAGAGATGAATATTTACTGTTAATGAAGCT
AACAGGAACAGGCATACCTCATGAGGAATCCCTGCTTCATGCAATTGTTCTGATAAGGTTTCAC
TTTGTTCAACACTAGTTGTACCAACAAGCACAGGGCGACCAACTTTGTTCATTCTTGATATCTC
CACGACAGCAGCACGCCATTTTCCATTTGTTGCTCTAAAAACAACATCCGATTCATCCTACATA
GGAAGAAATGAAATCATCTTTTGTCAGAGAAAGGGGTTGGGGAAGTTGAATCGGAAGGACATCT
CTTTCACAACTATTTAGAATTAAAACACGCAGAGTAGAAAGAAGGCAGGCACCTTTCGTATCAT
TGGCTTGTTTGTTGGAACAACGGTAACTTTTAGTTTGTATATGCTTTCGAACTCTTGGCTTTCC
GTAGCAGCAGTTCCAGTCATGCCACATAGTTTCGGAAACTGCCACAGAATGAATCAGTTCCCTT
AGAAAACAACAAACAGAAAATATTGAAAATAAAGGGGAGATTTACCATTAAGAAACAAAATGCT
AAACAATGGTTAGTACTCCCTTCGCTCCAAAAAGACATGATGTCTAGCACTCAAAATTTGTCCC
AGAAGAGTTAAGTACCCTCAGTCCACAAATCAAGCAGTTTTATCCCTTCAATACCCATTAATGA
GGGGCACTATAATCTTTTCCCCTCACTACTACACTTTCTTGGAATGGCTAGAAATCAAGTCTTT
TCGGGACAGATGGAGGAGCTATTTCAGTTCACCTTGTATCTCAACTATATCAAAGAACTTAACT
GTGGTGGTGGTTGAGTCTGCCATCCCACCACAACCCCTAGAGTTGGCATGATCTTTTAAGGGTG
GATAATTAGATCATTTGTTCAAGTATGGCATGGCAATCTGTGGATTGTTGTTCATTTGCACATT
ATGTATGTTCTTCCACAAGTATTCTGCTAGTAACAATGGGTATGATCAATGGATGCTTGCCATT
TTACATATCATACAATCATGTGTGAGTAGCTTTCCAGCATTGGAAAAAAATTGTCACTTGCCTG
TAGAAAGAAGTTCTGATAACTTATTGACGCAAGGGTAATTGTTTCATTTTGTATAGGTACACCT
TCTTTAGCTTCAATTGCTTGGTGAAGACCATCACTCCATCTTCTGCC
Conservation Information
Conserved circRNAs NA
PMCS 0.325706792
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017