Detail information of Os01g0321300_circ_g.7


General Information
CircRNA Name Os01g0321300_circ_g.7
ID in PlantcircBase osa_circ_001544
Alias NA
Organism Oryza sativa
Position chr1: 12241776-12245705  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os01g0321300
Parent gene annotation Similar to Protein translocase subunit secA. (Os01t0321300-00)
Parent gene strand -
Alternative splicing Os01g0321300_circ_g.3 Os01g0321300_circ_g.4 Os01g0321300_circ_g.5 Os01g0321300_circ_g.6 Os01g0321300_circ_g.8 Os01g0321300_circ_g.9 Os01g0321300_circ_g.10 Os01g0321300_circ_g.11 Os01g0321300_circ_g.12 Os01g0321300_circ_g.13 Os01g0321300_circ_g.14 Os01g0321300_circ_g.15 Os01g0321300_circ_g.16 Os01g0321300_circ_g.17 Os01g0321300_circ_g.18
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0321300-00:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAAGGTTATCTCTTAGATAATCGAAACCAAGCTCACTGTTTGTAACATAAGTAATATCACACA
AGTAATTCTCCCTCCTTTGCTCAGGTGTCATGTTTTcttggcataagcatctcacgcagcttca
accttgccatgaattctgcatttcctccaagaataatatcagtaccacgtcccgccatattggt
ggcaattg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGGCATAAGCATCTCACGCAGCTTCAACCTTGCCATGAATTCTGCATTTCCTCCAAGAATAA
TATCAGTACCACGTCCCGCCATATTGGTGGCAATTGTCACTGCACCAAGGCGTCCACTCTGAGC
TACAATTTCTGCCTCCCTCTCTACATTCTCTGGTTTAGCATTGAGGACCTACAGTACAAATTCA
AAGTAAAACTTGAGACGATTTTCGATGTGTTAGGAAATGAAATCATGAGCTTGTGGCTTCCAAA
GTTTGAAGCACATAATCAGAAGGCTAGCATAAATGCTTCTCAGATAGTTCCTTTTTCTATTGCA
GTTAAGCTGTAGTCTTGAGATGGTATAGGGTAGCTGGGGTAGAGAGGGAATAAGACGGCAGCAG
CAGAAGAGGCTTCCACAAAGAAACAAGGAACATGCAAATGCATAGAATATAGAGAGTGAGGGGT
TAACTGATTTCTATTCCTGTGCCGTGTACCACAATCGATACTGGGTTGCCTTGATCCTCGGCCC
CTTAGCACAACGCCCATGACAGCATGTGTACTGTACTACTGTTCACAGAACAGTATCGCAGCCC
ATAGCATGTCATTCATCACCTTCCTACTAATATTCATCTACTCCAGCTGCGACTCAAGCACTAA
TTTATCTTGGGCAAAAACTTGGGTGGGTGCTAAATAACCTACAGATGGAATGCAAGTAGCAAAA
GTTTGCTCTGAAACATCAACCAAGCTACACATTAATGCACAAAACTCTTTTTTGTGGTGTATGG
GGTATGAGAATGCAAAGATCAGTATTCTTGTTATAGCATTGCACTAAATGGAAAGTAGCTGAAT
ATTTACTGTTTTTAAGACAAGAGGCCAAAGGGCCAGCTTTTAATTGAAAGCCAACAGAGATGAA
TATTTACTGTTAATGAAGCTAACAGGAACAGGCATACCTCATGAGGAATCCCTGCTTCATGCAA
TTGTTCTGATAAGGTTTCACTTTGTTCAACACTAGTTGTACCAACAAGCACAGGGCGACCAACT
TTGTTCATTCTTGATATCTCCACGACAGCAGCACGCCATTTTCCATTTGTTGCTCTAAAAACAA
CATCCGATTCATCCTACATAGGAAGAAATGAAATCATCTTTTGTCAGAGAAAGGGGTTGGGGAA
GTTGAATCGGAAGGACATCTCTTTCACAACTATTTAGAATTAAAACACGCAGAGTAGAAAGAAG
GCAGGCACCTTTCGTATCATTGGCTTGTTTGTTGGAACAACGGTAACTTTTAGTTTGTATATGC
TTTCGAACTCTTGGCTTTCCGTAGCAGCAGTTCCAGTCATGCCACATAGTTTCGGAAACTGCCA
CAGAATGAATCAGTTCCCTTAGAAAACAACAAACAGAAAATATTGAAAATAAAGGGGAGATTTA
CCATTAAGAAACAAAATGCTAAACAATGGTTAGTACTCCCTTCGCTCCAAAAAGACATGATGTC
TAGCACTCAAAATTTGTCCCAGAAGAGTTAAGTACCCTCAGTCCACAAATCAAGCAGTTTTATC
CCTTCAATACCCATTAATGAGGGGCACTATAATCTTTTCCCCTCACTACTACACTTTCTTGGAA
TGGCTAGAAATCAAGTCTTTTCGGGACAGATGGAGGAGCTATTTCAGTTCACCTTGTATCTCAA
CTATATCAAAGAACTTAACTGTGGTGGTGGTTGAGTCTGCCATCCCACCACAACCCCTAGAGTT
GGCATGATCTTTTAAGGGTGGATAATTAGATCATTTGTTCAAGTATGGCATGGCAATCTGTGGA
TTGTTGTTCATTTGCACATTATGTATGTTCTTCCACAAGTATTCTGCTAGTAACAATGGGTATG
ATCAATGGATGCTTGCCATTTTACATATCATACAATCATGTGTGAGTAGCTTTCCAGCATTGGA
AAAAAATTGTCACTTGCCTGTAGAAAGAAGTTCTGATAACTTATTGACGCAAGGGTAATTGTTT
CATTTTGTATAGGTACACCTTCTTTAGCTTCAATTGCTTGGTGAAGACCATCACTCCATCTTCT
GCCCTGCCAAAAGGTAACATCTGAAAAGTGAAAACTAAACTAAGATAGATATTGAACAAAAAGA
TAACCATGACTGCAGAAATAATGAAGAATGATGCAAACAAAAAATTTAGCATCAAATACTCACG
AATTTGGAGGAAGATAACTAGGCTGGTACTTAGATCGAATTTAAACTAAATTCTGATCCAACTC
CCAAACACAACCAAGCTTTTAAAATAGAATGTTTTGCACAAATGGTGTGGACCCACACGCACAA
CCATGTAGATCAACCAGTACGTTAATGATTTAGACCACATATGCCACTATTAAATAGCATACTC
GAACTACAACTTTAACAACATTAAAGGACAGAATATGGAGTAAAATTATCCAATAGCTACAGAT
TAGTCTAATCCCTCACTGAACTTGTATTTTGAAACCACAAATTCCATGACAATGAGTTCATCAC
ATAATGGAGGGAGTAATTTTCTATGTCAAATAGTTGTTGAGAATTAGAAGTAGAGCATGCATGT
ACTAGTCGGGAGGCAACAGAACTAATTAATTTTTCAGCTTTGTGGATGAGTTAATGTTTCACAA
TTTTGATAACAATGATGCAACACTTACTGGCATTACTCGACCTGTGAACTCATCCACAATAAGC
ACTTCCTTGCTACGGACAATGTAATTCACATCTCTAAGGAAGAGTTCCTTAGCTTTGATTGCAT
TCAGAACATATGAAGCCCATTGTTCACGAGGATCGTATAGATCATTTATGTCCAGTATTTCTTC
AGCGTCCGCATAGCCTTCTTCTGTAAGTAAAACATTTCTCTGCTTTTCATCAACCTGAAGGAAA
TCATTTATAAGATCACAATTAGCATTATAGCTAATAAAGCAGACAAAATTATGAATAAGCACAA
TGTGCCTAGGAGTAATCATACTGTATGAGCAATATAATATCACGATACAAGCATCTATACTCTG
TACTACTTTAAATAATGTTAGTGGTGGTGTCTGAGTCCGCCTTCAACACCACAAACTGACATGT
GGGGCGACAAGCATAAGGTCCCCACAATATGTGAATGGCCCTAGAATTGCTGATTCTAGAAATT
GTAAGGGGTTACATACAAAACATTCAAATTCGCCTTCCACCCATAGATGAATTATAAGCGTCAA
TCTCGTATTAACCGACCGTATGGCTTATGGAAATAGACGAAGAGGATAAAAAAGAGGTGATCTA
GCAGCATATTTCAGTATGGTTGTCTTTGGAGATAAAATTATATGCCTAATCAACTAACTATGCT
ATAAACATGTAATTTTTGCTTTGCTTTTTATCTCTTATAATATCCATTGCATCGCACGGGCCTT
TGTCAGTATAGAAAATATGCTATATGACATAATCTAAAATGATGTTACATGATCAAAAGATGAT
TACACAGGAACAAAAATAGTTCATTGCTCACAGTGTAATGAATATCTCTTTCAAAAACTTCAGC
TATTTTTGCTGCTTTGTAATACCGATCACTTGGCTTTTCAGCAAGGCCTGATATTATAAGAGGT
GTTCTTGCTTCATCAATGAGAATGGAATCAACTTCATCTATCACACAATAGTTAAAGTTCCTCA
GGACAAGCTCATCAACAGTCTGCAAAAAAAATGAAGAATCAGTTAGCAGAATCTGTGAATCTGT
TATCACTGCACTCCTTCACCTATGGACAGGGAGAGGGAAATGTGATTATGACACTTCAAAGACG
AATGTGCCCAATCAGGCATTAACAAATAACTATCAAAGGAAACAGCATACCATTGCAAGGTTAT
CTCTTAGATAATCGAAACCAAGCTCACTGTTTGTAACATAAGTAATATCACACAAGTAATTCTC
CCTCCTTTGCTCAGGTGTCATGTTTT
Conservation Information
Conserved circRNAs NA
PMCS 0.120108793
Functional Information
Coding potential Y
Potential coding position 12245700-12242741(+)
12243097-12245692(-)
Potential amino acid sequence MFSWHKHLTQLQPCHEFCISSKNNISTTSRHIGGNCHCTKASTLSYNFCLPLYILWFSIEDLMR
NPCFMQLF*(+)
MTGTAATESQEFESIYKLKVTVVPTNKPMIRKDESDVVFRATNGKWRAAVVEISRMNKVGRPVL
VGTTSVEQSETLSEQLHEAGIPHEVLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIIL
GGNAEFMARLKLREMLMPRKHDT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017