Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0321300_circ_g.7 |
ID in PlantcircBase | osa_circ_001544 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 12241776-12245705 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os01g0321300 |
Parent gene annotation |
Similar to Protein translocase subunit secA. (Os01t0321300-00) |
Parent gene strand | - |
Alternative splicing | Os01g0321300_circ_g.3 Os01g0321300_circ_g.4 Os01g0321300_circ_g.5 Os01g0321300_circ_g.6 Os01g0321300_circ_g.8 Os01g0321300_circ_g.9 Os01g0321300_circ_g.10 Os01g0321300_circ_g.11 Os01g0321300_circ_g.12 Os01g0321300_circ_g.13 Os01g0321300_circ_g.14 Os01g0321300_circ_g.15 Os01g0321300_circ_g.16 Os01g0321300_circ_g.17 Os01g0321300_circ_g.18 |
Support reads | 1 |
Tissues | shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os01t0321300-00:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.120108793 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
12245700-12242741(+) 12243097-12245692(-) |
Potential amino acid sequence |
MFSWHKHLTQLQPCHEFCISSKNNISTTSRHIGGNCHCTKASTLSYNFCLPLYILWFSIEDLMR NPCFMQLF*(+) MTGTAATESQEFESIYKLKVTVVPTNKPMIRKDESDVVFRATNGKWRAAVVEISRMNKVGRPVL VGTTSVEQSETLSEQLHEAGIPHEVLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIIL GGNAEFMARLKLREMLMPRKHDT*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |