Plant Circular RNA Database

Detail information of Os11g0186400_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os11g0186400_circ_g.5
					
						ID in PlantcircBase
						osa_circ_008735
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 4388835-4390778  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os11g0186400						
					
						Parent gene annotation
						
							Similar to DNA polymerase delta catalytic subunit (EC 2.7.7.7). 
(Os11t0186400-00)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os11g0186400_circ_g.1 Os11g0186400_circ_g.2 Os11g0186400_circ_g.3 Os11g0186400_circ_g.4 Os11g0186400_circ_g.6 Os11g0186400_circ_g.7 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os11t0186400-00:10

General Information
CircRNA Name	Os11g0186400_circ_g.5
ID in PlantcircBase	osa_circ_008735
Alias	NA
Organism	Oryza sativa
Position	chr11: 4388835-4390778 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os11g0186400
Parent gene annotation	Similar to DNA polymerase delta catalytic subunit (EC 2.7.7.7). (Os11t0186400-00)
Parent gene strand	-
Alternative splicing	Os11g0186400_circ_g.1 Os11g0186400_circ_g.2 Os11g0186400_circ_g.3 Os11g0186400_circ_g.4 Os11g0186400_circ_g.6 Os11g0186400_circ_g.7
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os11t0186400-00:10

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACTACAACAGCAGGGGAGAAACAGAGAATGATACCTTCAAATCTGCTTTCGCCCTTTTCCGAGC
AGCCAACAATTCTTCAAGGATTTCAGGAAGTATACCtttgctgatttggttctcaaggtagtat
tggggatctattggtatgttattatccaaaacataaataggatcttctgacctctcatatgcct
acaagaag

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 930
Transcript exons: 4388835-4388924,4389008-4389082,4389171-4389242,4389321-
4389493,4389566-4389680,4389876-4389989,4390184-4390263,
4390357-4390444,4390543-4390599,4390713-4390778
TTTGCTGATTTGGTTCTCAAGGTAGTATTGGGGATCTATTGGTATGTTATTATCCAAAACATAA
ATAGGATCTTCTGACCTCTCATATGCCTTTGCCCCTTTTGCTGCTTTGATTATAACATAAGGAA
CCCGGTCACCAACAGTAGGAGCAGTAGCAGCGTCCCTCTTTCGCATTCTCTCAGCAAGCTCCAC
ATGGGCAGCTTTGACAGCATAATCCTCTCCTGTTTTAGTCAAACCCTTTGTTATAACTAGAAGA
GATAAGTCTACACGGTTCATTAGTAGATCAGAAATGGTGTTCTTGACATATTGAACTGCACCAG
GAACATCTCTGTCCACTAGTATTTTATGAAGGCACTCAGTAACCAGGTTCTTTACTAATAAACA
GTTGTCCCTTCTCACTGTTTCAATACCTTTCGTGTCCATTTTGTCAAATTTCTCAGGATTTGTC
CAGTACAAACCAGCATATCTCTTCTTGCTAATCAGTAGATAAGGGAAATAGATCTTCTCAAACT
CAAGCTTGATGGGCTTAATAAATGTTCCACTAATGTAGTCTGCAGCTTCTCTTCCTAGCTTCAT
TGCGTCCTCAACAGTAGAAACACCGAACTGTACCATTACAGAATCAGTATCTCCATAGATGACC
TCTGCATTGTGCTCATAGCCTCCAAGTGTCGTGAATTTATCTTCAACAAGCTTTTTTGTATGTT
CAATCATCTGTCGACCATAGCTGGTCACACTTGAAGAAATTTCTAAACAAGGTAATTGACCAAC
AGTCGCTCCAGTAAAACCATAGACAGAGTTTGCGCTTATTTTTAGGGCAAGCTGACGACCATCA
AGAACGGCCCTTTCAAATGGATCCTTTGCTTCCTTCAAATCTGCTTTCGCCCTTTTCCGAGCAG
CCAACAATTCTTCAAGGATTTCAGGAAGTATACC
						
					

						Genomic sequence
						
							TTTGCTGATTTGGTTCTCAAGGTAGTATTGGGGATCTATTGGTATGTTATTATCCAAAACATAA
ATAGGATCTTCTGACCTCTCATATGCCTACAAGAAGAAGGATTTCATCAAACTATCACCATCAC
AAGATAAATACATGACTCTGCAATTGAAAGTACATTCAAGTTTACCTTTGCCCCTTTTGCTGCT
TTGATTATAACATAAGGAACCCGGTCACCAACAGTAGGAGCAGTAGCAGCGTCCCTCTAACCAA
GGAAAAAACAGTCAGCAGCATCACTAAGTGTCTCCTATCTTGATCAGCAACATACAGAAAAAAG
ACACAATGGCTCATACCTTTCGCATTCTCTCAGCAAGCTCCACATGGGCAGCTTTGACAGCATA
ATCCTCTCCTGTTTTAGTCAAACCCTGTACAACAAACAGTTAAAGATTTACAACACAGACAACA
CAGAGGATTCAATCGTATTAAGTAGTGTGCGGATTCACCTTTGTTATAACTAGAAGAGATAAGT
CTACACGGTTCATTAGTAGATCAGAAATGGTGTTCTTGACATATTGAACTGCACCAGGAACATC
TCTGTCCACTAGTATTTTATGAAGGCACTCAGTAACCAGGTTCTTTACTAATAAACAGTTGTCC
CTTCTCACTGTTTCAATACCTATAAGCAAAGTTAGAATCATGTTAAAGCAAGAAGGTAAGATGA
TATCTAAGACAAGACAAAAGAAAATACCTTTCGTGTCCATTTTGTCAAATTTCTCAGGATTTGT
CCAGTACAAACCAGCATATCTCTTCTTGCTAATCAGTAGATAAGGGAAATAGATCTTCTCAAAC
TCAAGCTTGATGGGCTGCAGGAAAGGTATCAACATAAATATGAGTTGAACTCAAAGTAACAAAA
TTGGAAAAAAAATGGATACTGCAGATGCAAAATTAGAAAGGAAATGCAAAGGGCAAAATTATTA
CGACAAGTATCATTTCAGATGATTTTGAAACGGAGGGGCATTAATGTCAAATAACAGTTACCAC
AGTAGTTAATGAGTCACCTTAATAAATGTTCCACTAATGTAGTCTGCAGCTTCTCTTCCTAGCT
TCATTGCGTCCTCAACAGTAGAAACACCGAACTGTACCATTACAGAATCAGTATCTCCATAGAT
GACCTGTAATGCAAAAAACAAAGCATGAAAAGATAGAACATAAGCGAGAGGGCAGGCTAACCAA
ACTCATATACCAATAACTAAAGAAACAAAAGATCATGCAGGCAGGGAAGAAAGTGATTATTGTG
CTGATGTCTGGCCACCAACTGCACAGTTTTAGGTTTTGTCAAACAGGAATATGGCCACTCATCA
TTCACCTCTGCATTGTGCTCATAGCCTCCAAGTGTCGTGAATTTATCTTCAACAAGCTTTTTTG
TATGTTCAATCATCTGTCGACCTGTTTGATAAATACATCAGTTTTATGCAATACAACATTTCTC
TTGTTAGCTAACTGTACAATGAATTTATTGATTCCAGAATTGATGCTCACCATAGCTGGTCACA
CTTGAAGAAATTTCTAAACAAGGTAATTGACCAACAGTCGCTCCAGTAAAACCATAGACAGAGT
TTGCGCTTATCTGAAACATAAACCATCCAACAATATCATGATTCAATGAGTGCACATTTGTGTA
TCACTGATTTGAGGGAATTGGAGATAAAAAAGCTATGTAAATACTTTTAGGGCAAGCTGACGAC
CATCAAGAACGGCCCTTTCAAATGGATCCTTTGCTTCCTGAACAAGTAATTGGTGAATTTAGCA
TAGGATGTAAATGTAGCCTAAAGTGCAGAGGATTTTTATGTGCAATTGGCTCACTACAACAGCA
GGGGAGAAACAGAGAATGATACCTTCAAATCTGCTTTCGCCCTTTTCCGAGCAGCCAACAATTC
TTCAAGGATTTCAGGAAGTATACC
						
					

			
		

Sequences
Splice junction sequence	ACTACAACAGCAGGGGAGAAACAGAGAATGATACCTTCAAATCTGCTTTCGCCCTTTTCCGAGC AGCCAACAATTCTTCAAGGATTTCAGGAAGTATACCtttgctgatttggttctcaaggtagtat tggggatctattggtatgttattatccaaaacataaataggatcttctgacctctcatatgcct acaagaag
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 930 Transcript exons: 4388835-4388924,4389008-4389082,4389171-4389242,4389321- 4389493,4389566-4389680,4389876-4389989,4390184-4390263, 4390357-4390444,4390543-4390599,4390713-4390778 TTTGCTGATTTGGTTCTCAAGGTAGTATTGGGGATCTATTGGTATGTTATTATCCAAAACATAA ATAGGATCTTCTGACCTCTCATATGCCTTTGCCCCTTTTGCTGCTTTGATTATAACATAAGGAA CCCGGTCACCAACAGTAGGAGCAGTAGCAGCGTCCCTCTTTCGCATTCTCTCAGCAAGCTCCAC ATGGGCAGCTTTGACAGCATAATCCTCTCCTGTTTTAGTCAAACCCTTTGTTATAACTAGAAGA GATAAGTCTACACGGTTCATTAGTAGATCAGAAATGGTGTTCTTGACATATTGAACTGCACCAG GAACATCTCTGTCCACTAGTATTTTATGAAGGCACTCAGTAACCAGGTTCTTTACTAATAAACA GTTGTCCCTTCTCACTGTTTCAATACCTTTCGTGTCCATTTTGTCAAATTTCTCAGGATTTGTC CAGTACAAACCAGCATATCTCTTCTTGCTAATCAGTAGATAAGGGAAATAGATCTTCTCAAACT CAAGCTTGATGGGCTTAATAAATGTTCCACTAATGTAGTCTGCAGCTTCTCTTCCTAGCTTCAT TGCGTCCTCAACAGTAGAAACACCGAACTGTACCATTACAGAATCAGTATCTCCATAGATGACC TCTGCATTGTGCTCATAGCCTCCAAGTGTCGTGAATTTATCTTCAACAAGCTTTTTTGTATGTT CAATCATCTGTCGACCATAGCTGGTCACACTTGAAGAAATTTCTAAACAAGGTAATTGACCAAC AGTCGCTCCAGTAAAACCATAGACAGAGTTTGCGCTTATTTTTAGGGCAAGCTGACGACCATCA AGAACGGCCCTTTCAAATGGATCCTTTGCTTCCTTCAAATCTGCTTTCGCCCTTTTCCGAGCAG CCAACAATTCTTCAAGGATTTCAGGAAGTATACC
Genomic sequence	TTTGCTGATTTGGTTCTCAAGGTAGTATTGGGGATCTATTGGTATGTTATTATCCAAAACATAA ATAGGATCTTCTGACCTCTCATATGCCTACAAGAAGAAGGATTTCATCAAACTATCACCATCAC AAGATAAATACATGACTCTGCAATTGAAAGTACATTCAAGTTTACCTTTGCCCCTTTTGCTGCT TTGATTATAACATAAGGAACCCGGTCACCAACAGTAGGAGCAGTAGCAGCGTCCCTCTAACCAA GGAAAAAACAGTCAGCAGCATCACTAAGTGTCTCCTATCTTGATCAGCAACATACAGAAAAAAG ACACAATGGCTCATACCTTTCGCATTCTCTCAGCAAGCTCCACATGGGCAGCTTTGACAGCATA ATCCTCTCCTGTTTTAGTCAAACCCTGTACAACAAACAGTTAAAGATTTACAACACAGACAACA CAGAGGATTCAATCGTATTAAGTAGTGTGCGGATTCACCTTTGTTATAACTAGAAGAGATAAGT CTACACGGTTCATTAGTAGATCAGAAATGGTGTTCTTGACATATTGAACTGCACCAGGAACATC TCTGTCCACTAGTATTTTATGAAGGCACTCAGTAACCAGGTTCTTTACTAATAAACAGTTGTCC CTTCTCACTGTTTCAATACCTATAAGCAAAGTTAGAATCATGTTAAAGCAAGAAGGTAAGATGA TATCTAAGACAAGACAAAAGAAAATACCTTTCGTGTCCATTTTGTCAAATTTCTCAGGATTTGT CCAGTACAAACCAGCATATCTCTTCTTGCTAATCAGTAGATAAGGGAAATAGATCTTCTCAAAC TCAAGCTTGATGGGCTGCAGGAAAGGTATCAACATAAATATGAGTTGAACTCAAAGTAACAAAA TTGGAAAAAAAATGGATACTGCAGATGCAAAATTAGAAAGGAAATGCAAAGGGCAAAATTATTA CGACAAGTATCATTTCAGATGATTTTGAAACGGAGGGGCATTAATGTCAAATAACAGTTACCAC AGTAGTTAATGAGTCACCTTAATAAATGTTCCACTAATGTAGTCTGCAGCTTCTCTTCCTAGCT TCATTGCGTCCTCAACAGTAGAAACACCGAACTGTACCATTACAGAATCAGTATCTCCATAGAT GACCTGTAATGCAAAAAACAAAGCATGAAAAGATAGAACATAAGCGAGAGGGCAGGCTAACCAA ACTCATATACCAATAACTAAAGAAACAAAAGATCATGCAGGCAGGGAAGAAAGTGATTATTGTG CTGATGTCTGGCCACCAACTGCACAGTTTTAGGTTTTGTCAAACAGGAATATGGCCACTCATCA TTCACCTCTGCATTGTGCTCATAGCCTCCAAGTGTCGTGAATTTATCTTCAACAAGCTTTTTTG TATGTTCAATCATCTGTCGACCTGTTTGATAAATACATCAGTTTTATGCAATACAACATTTCTC TTGTTAGCTAACTGTACAATGAATTTATTGATTCCAGAATTGATGCTCACCATAGCTGGTCACA CTTGAAGAAATTTCTAAACAAGGTAATTGACCAACAGTCGCTCCAGTAAAACCATAGACAGAGT TTGCGCTTATCTGAAACATAAACCATCCAACAATATCATGATTCAATGAGTGCACATTTGTGTA TCACTGATTTGAGGGAATTGGAGATAAAAAAGCTATGTAAATACTTTTAGGGCAAGCTGACGAC CATCAAGAACGGCCCTTTCAAATGGATCCTTTGCTTCCTGAACAAGTAATTGGTGAATTTAGCA TAGGATGTAAATGTAGCCTAAAGTGCAGAGGATTTTTATGTGCAATTGGCTCACTACAACAGCA GGGGAGAAACAGAGAATGATACCTTCAAATCTGCTTTCGCCCTTTTCCGAGCAGCCAACAATTC TTCAAGGATTTCAGGAAGTATACC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_009330 						
					
						PMCS
						0.301343171

Conservation Information
Conserved circRNAs	osi_circ_009330
PMCS	0.301343171

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							4390585-4388839(+)
4390257-4388837(-)
						
						Potential amino acid sequence
						
							MDPLLPSNLLSPFSEQPTILQGFQEVYLC*(+)
MIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPI
KLEFEKIYFPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDR
DVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGEDYAVKAAHVELAERMRKRDAATAPTVG
DRVPYVIIKAAKGAKAYERSEDPIYVLDNNIPIDPQYYLENQISKGILPEILEELLAARKRAKA
DLKEAKDPFERAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVE
DKFTTLGGYEHNAEVIYGDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFP
YLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQYVK
NTISDLLMNRVDLSLLVITKGLTKTGEDYAVKAAHVELAERMRKRDAATAPTVGDRVPYVIIKA
AKGAKAYERSEDPIYVLDNNIPIDPQYYLENQISKGILPEILEELLAARKRAKADLKEAKDPFE
RAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYE
HNAEVIYGDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFPYLLISKKRYA
GLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQYVKNTISDLLMNR
VDLSLLVITKGLTKTGEDYAVKAAHVELAERMRKRDAATAPTVGDRVPYVIIKAAKGAKAYERS
EDPIYVLDNNIPIDPQYYLENQISKGILPEILEELLAARKRAKADLKEAKDPFERAVLDGRQLA
LKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDT
DSVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFPYLLISKKRYAGLYWTNPEKF
DKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQYVKNTISDLLMNRVDLSLLVITK
GLTKTGEDYAVKAAHVELAERMRKRDAATAPTVGDRVPYVIIKAAKGAKAYERSEDPIYVLDNN
IPIDPQYYLENQISK(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	4390585-4388839(+) 4390257-4388837(-)
Potential amino acid sequence	MDPLLPSNLLSPFSEQPTILQGFQEVYLC*(+) MIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPI KLEFEKIYFPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDR DVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGEDYAVKAAHVELAERMRKRDAATAPTVG DRVPYVIIKAAKGAKAYERSEDPIYVLDNNIPIDPQYYLENQISKGILPEILEELLAARKRAKA DLKEAKDPFERAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVE DKFTTLGGYEHNAEVIYGDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFP YLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQYVK NTISDLLMNRVDLSLLVITKGLTKTGEDYAVKAAHVELAERMRKRDAATAPTVGDRVPYVIIKA AKGAKAYERSEDPIYVLDNNIPIDPQYYLENQISKGILPEILEELLAARKRAKADLKEAKDPFE RAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYE HNAEVIYGDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFPYLLISKKRYA GLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQYVKNTISDLLMNR VDLSLLVITKGLTKTGEDYAVKAAHVELAERMRKRDAATAPTVGDRVPYVIIKAAKGAKAYERS EDPIYVLDNNIPIDPQYYLENQISKGILPEILEELLAARKRAKADLKEAKDPFERAVLDGRQLA LKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDT DSVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFPYLLISKKRYAGLYWTNPEKF DKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQYVKNTISDLLMNRVDLSLLVITK GLTKTGEDYAVKAAHVELAERMRKRDAATAPTVGDRVPYVIIKAAKGAKAYERSEDPIYVLDNN IPIDPQYYLENQISK(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os11g0186400_circ_g.5

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