Detail information of BGIOSGA010745_circ_g.3


General Information
CircRNA Name BGIOSGA010745_circ_g.3
ID in PlantcircBase osi_circ_004817
Alias 3:14569430|14571662
Organism Oryza sativa ssp. indica
Position chr3: 14569430-14571662  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA010745
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA010745_circ_g.1 BGIOSGA010745_circ_g.2 BGIOSGA010745_circ_g.4 BGIOSGA010745_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA010745-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCTGAAGAAACACCAGCGGCAGGGATTTGAGTGACATAAAGTGCATTTAGAGCATTTGTTGTT
TCATCCTCACTAATGTCGCATTTGTTCATCCCAGGTctgcagagttttgcagtttcagaataca
tcttcattgactgagcaacatcgcctgatctcgaattgtccagattaggagtttcccaaagaga
tgcaacat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCAGAGTTTTGCAGTTTCAGAATACATCTTCATTGACTGAGCAACATCGCCTGATCTCGAAT
TGTCCAGATTAGGAGTTTCCCAAAGAGATGCAACATGCAGAAACTTCAAAGCCGCTTCAAAGTA
CAGGCCCATACTTTCAAGTTCAAGTCCTTTTTCCTGCAGGGAAAATTGTCATTAGATACTTCCA
AGCAAAATTGACAGCACAATTATGCTGCCTGAGACAACATTTAACACAATTGGTGTCACCAACC
TTCAAATGATTAGCCTTGTGTTTTAGATCCCGAGCTTCCTTGAGTGCAAATGCAATCATATTAC
CATCCCTCCTAATTGGACTCGCAGAATCTCCATTTTCAACATTGGACCTTAATTGTGTGTGGTT
TTTTGAAGCACCTGGTTTTACTCTAGTGGTGTGAACCTCTGATTTGCCTTCTTTCATATGAGAA
TGATTATCTTGACCAATAGACTTTTGCATATCTTGATTATCAATACTAGGACGTAATTTCTCTT
TTCTGGATGACATCTCTATCTGCTTATTTCCCTCTGAAATCAAGTTACTGGATCCATTTCTACC
TTGGCGTGAAGGAGCACTATTTTTACTTTTATGTCCAGTGGAATCAGCTGTAGCCCTCGGGTTA
AAACAATCCTGCTGATCAGGTTGTAGTGTAGGGCCATGCATATCCAAGATCTTTTTATCACCAG
GGTACAATTGATTATCTACTCTCCCCATACCGGAGTTATTTGTAGAACCACGCAGAATGGCTTC
ACCCACAGCTTGCTGCCCAGTATGTAGTAAACCAACTTCGTGGGTTGGATATTTCATTGGGGTA
TGCAAGATGCTTGAATCAGCATTCAATTCTCCATCTTTTCCAGTTTTCCTGGCCTTAGAAATCT
TATCAGTGTTTGAATTTTTCAGTGGTGATGAAGATACTGATTCAACGGGAGAGCCCTTTGCTTC
TCGAGAATTTTTGTTTCTCCGAGAGCTTGAGACCTTTGAAGAGCTTGAAGTTGCAACCGTAGAA
GACTGAAGACAGGCAACATCCCTCCTAGTGGGTTCCGCCAAGTTCAAGACCTGTCTGGGAGGTT
GATTATCCCATAGTTCTGATGGACCTTCTTTACAAGTAACAAATTTGTTGTCAGCAACTAGCTC
ATTATCTTGACGCCTTCCAGCAGAAGAAAATAATGCATTTGCATCCTGAACTTCTTCAGGCCTA
GCTTCGGACTTCTTTATCTTTGATAATCTCTCGTTCAAATTCTCATTATCGCCCCCTTTGCTTG
TGTGGTCCATTGAACTGAGCCGGTTATCCTCCCATTCCTTCACTGTCTTCTTTTTGCCAGACAA
ATCTAATGTTTCTATGCCTGCACGATGTTCTTTCATCTTCTCATGAAAGGCCACATCATCATCA
TTAATTCTCTTTGTTTTTTCCAAAATATCAAACCTTGAAGCTTTTTCCTTGCGTAAAGAAAACT
CATCTTGTTCACATGAGTCCTTTGACATTTTTGCTTTTGCAGATAAAGCTTTGGTTTCATCACG
AACTTTGTTGCCAGCTAAATCGTATTCATTTTTCCAATCTTTGTTAAAGTAATGTCGATCCTCT
TTTTTTGTCTTCTTAGATGTTTTGTGCTCATCTCGATCAATTCCTCTCCTGTTTTTTGATTTTG
AATGCTTCTTCGATTTTTCTGTAAGATCTCCTGTATTTAAATAGGAATTATATGTCAGTAAACA
TTTAAATAACTAAACACAGTATTTACTGAAAAATATCAGAAGATAATACATATCAGCTAAATAT
AAGCAATAAACATGAAAGAGAGCAGAACCTCCATCTGAGTGGCTACTGCGACTCTTGTGCTTAG
ACTTATGCCTTTCAGAAGCTGATTTGCTCTGTGGCACCAGATCATGTGTGCTTACAGGATCTCT
GTCATTAGTATAATGTTCACTATCAACAACTTCTCTATTTTTTGCAGGGGCTTGTTGATTGCTC
GTGAGAGTCATTTTTGCAGGGGCTTGTTGATCATGCTCGTAACAGTTTTCGTCTTTCAGAGCAT
TTTTCCTTTTCCTACTCTGTCCCAGTTGTCCACTTATATTGTAGGTGCTAGATGCTGCTACACT
TGCATGCGCAGTGTGAGGGCCACCTGAAGAAACACCAGCGGCAGGGATTTGAGTGACATAAAGT
GCATTTAGAGCATTTGTTGTTTCATCCTCACTAATGTCGCATTTGTTCATCCCAGGT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 14571657-14569432(-)
14571640-14569468(+)
Potential amino acid sequence MNKCDISEDETTNALNALYVTQIPAAGVSSGGPHTAHASVAASSTYNISGQLGQSRKRKNALKD
ENCYEHDQQAPAKMTLTSNQQAPAKNREVVDSEHYTNDRDPVSTHDLVPQSKSASERHKSKHKS
RSSHSDGGDLTEKSKKHSKSKNRRGIDRDEHKTSKKTKKEDRHYFNKDWKNEYDLAGNKVRDET
KALSAKAKMSKDSCEQDEFSLRKEKASRFDILEKTKRINDDDVAFHEKMKEHRAGIETLDLSGK
KKTVKEWEDNRLSSMDHTSKGGDNENLNERLSKIKKSEARPEEVQDANALFSSAGRRQDNELVA
DNKFVTCKEGPSELWDNQPPRQVLNLAEPTRRDVACLQSSTVATSSSSKVSSSRRNKNSREAKG
SPVESVSSSPLKNSNTDKISKARKTGKDGELNADSSILHTPMKYPTHEVGLLHTGQQAVGEAIL
RGSTNNSGMGRVDNQLYPGDKKILDMHGPTLQPDQQDCFNPRATADSTGHKSKNSAPSRQGRNG
SSNLISEGNKQIEMSSRKEKLRPSIDNQDMQKSIGQDNHSHMKEGKSEVHTTRVKPGASKNHTQ
LRSNVENGDSASPIRRDGNMIAFALKEARDLKHKANHLKEKGLELESMGLYFEAALKFLHVASL
WETPNLDNSRSGDVAQSMKMYSETAKLCRPGMNKCDISEDETTNALNALYVTQIPAAGVSSGGP
HTAHASVAASSTYNISGQLGQSRKRKNALKDENCYEHDQQAPAKMTLTSNQQAPAKNREVVDSE
HYTNDRDPVSTHDLVPQSKSASERHKSKHKSRSSHSDGGDLTEKSKKHSKSKNRRGIDRDEHKT
SKKTKKEDRHYFNKDWKNEYDLAGNKVRDETKALSAKAKMSKDSCEQDEFSLRKEKASRFDILE
KTKRINDDDVAFHEKMKEHRAGIETLDLSGKKKTVKEWEDNRLSSMDHTSKGGDNENLNERLSK
IKKSEARPEEVQDANALFSSAGRRQDNELVADNKFVTCKEGPSELWDNQPPRQVLNLAEPTRRD
VACLQSSTVATSSSSKVSSSRRNKNSREAKGSPVESVSSSPLKNSNTDKISKARKTGKDGELNA
DSSILHTPMKYPTHEVGLLHTGQQAVGEAILRGSTNNSGMGRVDNQLYPGDKKILDMHGPTLQP
DQQDCFNPRATADSTGHKSKNSAPSRQGRNGSSNLISEGNKQIEMSSRKEKLRPSIDNQDMQKS
IGQDNHSHMKEGKSEVHTTRVKPGASKNHTQLRSNVENGDSASPIRRDGNMIAFALKEARDLKH
KANHLKEKGLELESMGLYFEAALKFLHVASLWETPNLDNSRSGDVAQSMKMYSETAKLCRPGMN
KCDISEDETTNALNALYVTQIPAAGVSSGGPHTAHASVAASSTYNISGQLGQSRKRKNALKDEN
CYEHDQQAPAKMTLTSNQQAPAKNREVVDSEHYTNDRDPVSTHDLVPQSKSASERHKSKHKSRS
SHSDGGDLTEKSKKHSKSKNRRGIDRDEHKTSKKTKKEDRHYFNKDWKNEYDLAGNKVRDETKA
LSAKAKMSKDSCEQDEFSLRKEKASRFDILEKTKRINDDDVAFHEKMKEHRAGIETLDLSGKKK
TVKEWEDNRLSSMDHTSKGGDNENLNERLSKIKKSEARPEEVQDANALFSSAGRRQDNELVADN
KFVTCKEGPSELWDNQPPRQVLNLAEPTRRDVACLQSSTVATSSSSKVSSSRRNKNSREAKGSP
VESVSSSPLKNSNTDKISKARKTGKDGELNADSSILHTPMKYPTHEVGLLHTGQQAVGEAILRG
STNNSGMGRVDNQLYPGDKKILDMHGPTLQPDQQDCFNPRATADSTGHKSKNSAPSRQGRNGSS
NLISEGNKQIEMSSRKEKLRPSIDNQDMQKSIGQDNHSHMKEGKSEVHTTRVKPGASKNHTQLR
SNVENGDSASPIRRDGNMIAFALKEARDLKHKANHLKEKGLELESMGLYFEAALKFLHVASLWE
TPNLDNSRSGDVAQSMKMYSETAKLCRPGMNKCDISEDETTNALNALYVTQIPAAGVSSGGPHT
AHASVAASSTYNISGQLGQSRKRKNALKDENCYEHDQQAPAKMTLTSNQQAPAKNREVVDSEHY
TNDRDPVSTHDLVPQSKSASERHKSKHKSRSSHSDGGDLTEKSKKHSKSKNRRGIDRDEHKTSK
KTKKEDRHYFNKDWKNEYDLAGNKVRDETKALSAKAKMSKDSCEQDEFSLRKEKASRFDILEKT
KRINDDDVAFHEKMKEHRAGIETLDLSGKKKTVKEWEDNRLSSMDHTSKGGDNENLNERLSKIK
KSEARPEEVQDANALFSSAGRRQDNELVADNKFVTCKEGPSELWDNQPPRQVLNLAEPTRRDVA
CLQSSTVATSSSSKVSSSRRNKNSREAKGSPVESVSSSPLKNSNTDKISKARKTGKDGELNADS
SILHTPMKYPTHEVGLLHTGQQAVGEAILRGSTNNSGMGRVDNQLYPGDKKILDMHGPTLQPDQ
QDCFNPRATADSTGHKSKNSAPSRQGRNGSSNLISEGNKQIEMSSRKEKLRPSIDNQDMQKSIG
QDNHSHMKEGKSEVHTTRVKPGASKNHTQLRSNVENGDSASPIRRDGNMIAFALKEARDLKHKA
NHLKEKGLELESMGLYFEAALKFLHVASLWETPNLDNSRSGDVAQSMKMYSETAKLC(-)
MSHLFIPGLQSFAVSEYIFID*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021