Detail information of BGIOSGA010745_circ_g.4


General Information
CircRNA Name BGIOSGA010745_circ_g.4
ID in PlantcircBase osi_circ_000380
Alias NA
Organism Oryza sativa ssp. indica
Position chr3: 14570839-14572358  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method DCC
Parent gene BGIOSGA010745
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA010745_circ_g.1 BGIOSGA010745_circ_g.2 BGIOSGA010745_circ_g.3 BGIOSGA010745_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   TT-AT
Number of exons covered BGIOSGA010745-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCTGAACCTGGAAATGTGCCATGCTTTACACTGGAAGGGATCTCCTTTTTTGCTGGCCCAGTT
ATATGAAGTTCCTTCTCATTATCACTGTTCATCATCtaattctctttgttttttccaaaatatc
aaaccttgaagctttttccttgcgtaaagaaaactcatcttgttcacatgagtcctttgacatt
tttgcttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TAATTCTCTTTGTTTTTTCCAAAATATCAAACCTTGAAGCTTTTTCCTTGCGTAAAGAAAACTC
ATCTTGTTCACATGAGTCCTTTGACATTTTTGCTTTTGCAGATAAAGCTTTGGTTTCATCACGA
ACTTTGTTGCCAGCTAAATCGTATTCATTTTTCCAATCTTTGTTAAAGTAATGTCGATCCTCTT
TTTTTGTCTTCTTAGATGTTTTGTGCTCATCTCGATCAATTCCTCTCCTGTTTTTTGATTTTGA
ATGCTTCTTCGATTTTTCTGTAAGATCTCCTGTATTTAAATAGGAATTATATGTCAGTAAACAT
TTAAATAACTAAACACAGTATTTACTGAAAAATATCAGAAGATAATACATATCAGCTAAATATA
AGCAATAAACATGAAAGAGAGCAGAACCTCCATCTGAGTGGCTACTGCGACTCTTGTGCTTAGA
CTTATGCCTTTCAGAAGCTGATTTGCTCTGTGGCACCAGATCATGTGTGCTTACAGGATCTCTG
TCATTAGTATAATGTTCACTATCAACAACTTCTCTATTTTTTGCAGGGGCTTGTTGATTGCTCG
TGAGAGTCATTTTTGCAGGGGCTTGTTGATCATGCTCGTAACAGTTTTCGTCTTTCAGAGCATT
TTTCCTTTTCCTACTCTGTCCCAGTTGTCCACTTATATTGTAGGTGCTAGATGCTGCTACACTT
GCATGCGCAGTGTGAGGGCCACCTGAAGAAACACCAGCGGCAGGGATTTGAGTGACATAAAGTG
CATTTAGAGCATTTGTTGTTTCATCCTCACTAATGTCGCATTTGTTCATCCCAGGTCTGCAAAG
ACAAATTTGGATTGTATTTTTCAGTAATGGAATTTTTTCTTCCCCAATTGTCAGACCACTCAGA
GAAAGAAAACTGCATGACCCTTGAATTAGAGTGCTACCTCAATGTTGAATTTGCACAGCTTATG
GACCACTTAAAAATACTTTTTTTTTTGTTTAAGGCGGGGTGGATGGGTGTTCGGGGGGAGATAT
CAGAATCTAGTCAAATTACCTGTCTAATCAGAAATCGTTTAAGGTGTACAAAGAAATTCCAGAT
CAAATAACTATATTTAACAACGTTTAACCATGTACTAAGGACAACTTAACATATGTAAGGTGCC
AATTGAAGCAAGCATGTATGGTGAGGCATAACACTGGATAAATGCAATTCTAATCAAACTGAAC
TAGAACTTACAGCCAGTCAAGCATGCTGCATATCCACTTTTTTGGAAGCATGGAAGTGTTTGTC
CCGTAGGGGAGGAGACGCCATTTATGACACATGTCACAGCATACCCAATTATCCTCTATCAAAA
CAGGTGCAGGAAGAGAAGCTGCATTTGCAGGTCCAGGTATAATCCCGCCATTTGACGGCATATG
CAACTGCTGTTCCTCTGAACCTGGAAATGTGCCATGCTTTACACTGGAAGGGATCTCCTTTTTT
GCTGGCCCAGTTATATGAAGTTCCTTCTCATTATCACTGTTCATCATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019