Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d035960_circ_g.4 |
ID in PlantcircBase | zma_circ_005177 |
Alias | leafdr_test_circ_002297 |
Organism | Zea mays |
Position | chr6: 62651280-62672025 JBrowse» |
Reference genome | AGPv4.38 |
Type | ui-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d035960 |
Parent gene annotation |
DNA-directed RNA polymerase III subunit 2 |
Parent gene strand | + |
Alternative splicing | Zm00001d035960_circ_g.1 Zm00001d035960_circ_g.2 Zm00001d035960_circ_g.3 Zm00001d035960_circ_g.5 Zm00001d035960_circ_g.6 Zm00001d035960_circ_g.7 Zm00001d035960_circ_g.8 Zm00001d035960_circ_g.9 Zm00001d035960_circ_g.10 Zm00001d035960_circ_g.11 |
Support reads | NA |
Tissues | leaf |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | Zm00001d035960_T008:25 Zm00001d035960_T007:30 Zm00001d035960_T002:29 Zm00001d035960_T024:29 Zm00001d035960_T005:30 Zm00001d035960_T009:30 Zm00001d035960_T021:30 Zm00001d035960_T003:31 Zm00001d035960_T028:16 Zm00001d035960_T004:31 Zm00001d035960_T026:23 Zm00001d035960_T025:7 Zm00001d035960_T006:30 Zm00001d035960_T015:29 Zm00001d035960_T018:31 Zm00001d035960_T029:10 Zm00001d035960_T023:7 Zm00001d035960_T019:30 Zm00001d035960_T001:30 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.200745085 |
Functional Information | |
---|---|
Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Tang et al., 2018 |