Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G17220_circ_g.16 |
ID in PlantcircBase | ath_circ_003040 |
Alias | At_ciR909, Ath_circ_FC0407 |
Organism | Arabidpsis thaliana |
Position | chr1: 5888792-5889857 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | KNIFE, PcircRNA_finder, circRNA_finder, find_circ |
Parent gene | AT1G17220 |
Parent gene annotation |
Translation initiation factor IF-2, chloroplastic |
Parent gene strand | + |
Alternative splicing | AT1G17220_circ_g.4 AT1G17220_circ_g.5 AT1G17220_circ_g.6 AT1G17220_circ_g.7 AT1G17220_circ_g.8 AT1G17220_circ_g.9 AT1G17220_circ_g.10 AT1G17220_circ_g.11 AT1G17220_circ_g.12 AT1G17220_circ_g.13 AT1G17220_circ_g.14 AT1G17220_circ_g.15 AT1G17220_circ_g.17 AT1G17220_circ_g.18 |
Support reads | 7/63 |
Tissues | leaf/whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G17220.1:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.304936899 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5888867-5889854(+) |
Potential amino acid sequence |
MAEARAVSLRDERISAKAGDGKVTLSSLASAVSAKKMSGLDLHQLNIILKVDVQGSIEAVRQAL QVLPQENVTLKFLLQATGDVSNSDVDLASASEAIVFGFNVKASGSVKKAAENKGVEIRLYRVIY ELIDDVRNAMEGLLESVEEQIPIGSAEVRATFSSGSGRVAGCMVNEGKFVKDCGIRVVRKGKTV HVGVLDSLKRVKENVKEVIGLNNVPIAGDEFEIVSSLDVAREMAEARAVSLRDERISAKAGDGK VTLSSLASAVSAKKMSGLDLHQLNIILKVDVQGSIEAVRQALQVLPQENVTLKFLLQATGDVSN SDVDLASASEAIVFGFNVKASGSVKKAAENKGVEIRLYRVIYELIDDVRNAMEGLLESVEEQIP IGSAEVRATFSSGSGRVAGCMVNEGKFVKDCGIRVVRKGKTVHVGVLDSLKRVKENVKEVIGLN NVPIAGDEFEIVSSLDVAREMAEARAVSLRDERISAKAGDGKVTLSSLASAVSAKKMSGLDLHQ LNIILKVDVQGSIEAVRQALQVLPQENVTLKFLLQATGDVSNSDVDLASASEAIVFGFNVKASG SVKKAAENKGVEIRLYRVIYELIDDVRNAMEGLLESVEEQIPIGSAEVRATFSSGSGRVAGCMV NEGKFVKDCGIRVVRKGKTVHVGVLDSLKRVKENVKEVIGLNNVPIAGDEFEIVSSLDVAREMA EARAVSLRDERISAKAGDGKVTLSSLASAVSAKKMSGLDLHQLNIILKVDVQGSIEAVRQALQV LPQENVTLKFLLQATGDVSNSDVDLASASEAIVFGFNVKASGSVKKAAENKGVEIRLYRVIYEL IDDVRNAMEGLLESVEEQIPIGSAEVRATFSSGSGRVAGCMVNEGKFVKDCGIRVVRKGKTVHV GVLDSLKRVKENVKE(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017;Chen et al., 2017a |