Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G17220_circ_g.7 |
ID in PlantcircBase | ath_circ_003031 |
Alias | At_ciR1703 |
Organism | Arabidpsis thaliana |
Position | chr1: 5887261-5888618 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder, find_circ |
Parent gene | AT1G17220 |
Parent gene annotation |
Translation initiation factor IF-2, chloroplastic |
Parent gene strand | + |
Alternative splicing | AT1G17220_circ_g.4 AT1G17220_circ_g.5 AT1G17220_circ_g.6 AT1G17220_circ_g.8 AT1G17220_circ_g.9 AT1G17220_circ_g.10 AT1G17220_circ_g.11 AT1G17220_circ_g.12 AT1G17220_circ_g.13 AT1G17220_circ_g.14 AT1G17220_circ_g.15 AT1G17220_circ_g.16 AT1G17220_circ_g.17 AT1G17220_circ_g.18 |
Support reads | 5/11 |
Tissues | leaf/root, aerial |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G17220.1:6 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.339598269 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
5887556-5888615(+) |
Potential amino acid sequence |
MRARGARVTDIAIIVVAADDGIRPQTNEAIAHAKAAAVPIVIAINKIDKEGASPDRVMQELSSI GLMPEDWGGDVPMVQISALKGENVDDLLETVMLVAELQELKANPHRNAKGIVIEAGLDKAKGPF ATFIVQKGTLKRGDVVVCGEAFGKVRALFDHSGERVDEAGPSIPVQVAASEAGGITQGIGAYKV SVPVDGKLQSCVFLDTPGHEAFGAMRARGARVTDIAIIVVAADDGIRPQTNEAIAHAKAAAVPI VIAINKIDKEGASPDRVMQELSSIGLMPEDWGGDVPMVQISALKGENVDDLLETVMLVAELQEL KANPHRNAKGIVIEAGLDKAKGPFATFIVQKGTLKRGDVVVCGEAFGKVRALFDHSGERVDEAG PSIPVQVAASEAGGITQGIGAYKVSVPVDGKLQSCVFLDTPGHEAFGAMRARGARVTDIAIIVV AADDGIRPQTNEAIAHAKAAAVPIVIAINKIDKEGASPDRVMQELSSIGLMPEDWGGDVPMVQI SALKGENVDDLLETVMLVAELQELKANPHRNAKGIVIEAGLDKAKGPFATFIVQKGTLKRGDVV VCGEAFGKVRALFDHSGERVDEAGPSIPVQVAASEAGGITQGIGAYKVSVPVDGKLQSCVFLDT PGHEAFGAMRARGARVTDIAIIVVAADDGIRPQTNEAIAHAKAAAVPIVIAINKIDKEGASPDR VMQELSSIGLMPEDWGGDVPMVQISALKGENVDDLLETVMLVAELQELKANPHRNAKGIVIEAG LDKAKGPFATFIVQKGTLKRGDVVVCGEAFGKVRALFDHSGERVDEAGPSIPVQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ye et al., 2015;Chu et al., 2017 |