Detail information of AT5G02500_circ_g.14


General Information
CircRNA Name AT5G02500_circ_g.14
ID in PlantcircBase ath_circ_036021
Alias At_ciR208
Organism Arabidpsis thaliana
Position chr5: 554631-554736  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRI, circRNA_finder, find_circ, circseq_cup, CIRI-full
Parent gene AT5G02500
Parent gene annotation Probable mediator of RNA polymerase II transcription subunit 37e
Parent gene strand -
Alternative splicing AT5G02490_circ_g.1 5_circ_ag.2 AT5G02490_circ_g.3 5_circ_ag.4 5_circ_ag.5 AT5G02500_circ_g.1 AT5G02500_circ_g.2 AT5G02500_circ_g.3 AT5G02500_circ_g.4 AT5G02500_circ_g.5 AT5G02500_circ_g.6 AT5G02500_circ_g.7 AT5G02500_circ_g.8 AT5G02500_circ_g.9 AT5G02500_circ_g.10 AT5G02500_circ_g.11 AT5G02500_circ_g.12 AT5G02500_circ_g.13 AT5G02500_circ_g.15 AT5G02500_circ_g.16 AT5G02500_circ_g.17 AT5G02500_circ_g.18 AT5G02500_circ_g.19 AT5G02500_circ_g.20 AT5G02500_circ_g.21 AT5G02500_circ_g.22 AT5G02500_circ_g.23 AT5G02500_circ_g.24 AT5G02500_circ_g.25 AT5G02500_circ_g.26 AT5G02500_circ_g.27 AT5G02500_circ_g.28 AT5G02500_circ_g.29 AT5G02500_circ_g.30 AT5G02500_circ_g.31 AT5G02500_circ_g.32 AT5G02500_circ_g.33
Support reads 23/32
Tissues leaf/root, leaf, aerial, inflorescences
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT5G02500.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGGTTGGTTGTCTGAGTAGGTGGAGAAGACTTGTTCCTTCTTGGTTGGGATGgttgttgtcct
tggttctggctctctctccttcgtacacctggatcaacacac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 106
Transcript exons: 554631-554736
GTTGTTGTCCTTGGTTCTGGCTCTCTCTCCTTCGTACACCTGGATCAACACACCGGGTTGGTTG
TCTGAGTAGGTGGAGAAGACTTGTTCCTTCTTGGTTGGGATG

Genomic sequence GTTGTTGTCCTTGGTTCTGGCTCTCTCTCCTTCGTACACCTGGATCAACACACCGGGTTGGTTG
TCTGAGTAGGTGGAGAAGACTTGTTCCTTCTTGGTTGGGATG
Conservation Information
Conserved circRNAs NA
PMCS 0.807626697
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017