Detail information of 5_circ_ag.2


General Information
CircRNA Name 5_circ_ag.2
ID in PlantcircBase ath_circ_036004
Alias At_ciR286
Organism Arabidpsis thaliana
Position chr5: 550533-554387  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method circRNA_finder, find_circ, circseq_cup
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT5G02490_circ_g.1 AT5G02490_circ_g.3 5_circ_ag.4 5_circ_ag.5 AT5G02500_circ_g.1 AT5G02500_circ_g.2 AT5G02500_circ_g.3 AT5G02500_circ_g.4 AT5G02500_circ_g.5 AT5G02500_circ_g.6 AT5G02500_circ_g.7 AT5G02500_circ_g.8 AT5G02500_circ_g.9 AT5G02500_circ_g.10 AT5G02500_circ_g.11 AT5G02500_circ_g.12 AT5G02500_circ_g.13 AT5G02500_circ_g.14 AT5G02500_circ_g.15 AT5G02500_circ_g.16 AT5G02500_circ_g.17 AT5G02500_circ_g.18 AT5G02500_circ_g.19 AT5G02500_circ_g.20 AT5G02500_circ_g.21 AT5G02500_circ_g.22 AT5G02500_circ_g.23 AT5G02500_circ_g.24 AT5G02500_circ_g.25 AT5G02500_circ_g.26 AT5G02500_circ_g.27 AT5G02500_circ_g.28 AT5G02500_circ_g.29 AT5G02500_circ_g.30 AT5G02500_circ_g.31 AT5G02500_circ_g.32 AT5G02500_circ_g.33
Support reads 10/4
Tissues leaf/aerial
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTCTTGTCTGCAGCCGGGAGCTTCTCACCAATCTTCTCGTCTTGGATGGTGTTCCTCATGTT
GTAAGCGTAGTTCTCGAGAGCGTTCTTGGCTTCAACcttcttcttgtctgcagctggaagcttc
tcaccgatcttctcatcacggatggtgttcctcatgttgtaagcgtagttctcaagagcgttct
tggcctcg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 102
Transcript exons: 550533-554387
CTTCTTCTTGTCTGCAGCCGGGAGCTTCTCACCAATCTTCTCGTCTTGGATGGTGTTCCTCATG
TTGTAAGCGTAGTTCTCGAGAGCGTTCTTGGCTTCAAC

Genomic sequence CTTCTTCTTGTCTGCAGCTGGAAGCTTCTCACCGATCTTCTCATCACGGATGGTGTTCCTCATG
TTGTAAGCGTAGTTCTCAAGAGCGTTCTTGGCCTCGACCTTCTTCTTGTGCTCCTCATCCTCAG
ACTTGTACTTCTCCGCTTCTTGAACCATCTTCTCAATATCCTCTTTAGACAAACGACCCTTGTC
ATTAGTGATTGTGATCTTGTTCTTCTTTCCAGTGGTCTTGTCCTCAGCAGAGACGTTGAGGATA
CCATTGGCGTCAATGTCGAAGCAGACAGTGATTTGAGGGACACCTCGTGGAGCAGGGGGAATTC
CAGAAAGCTCAAATTTACCGAGGAGGTTGTTGTCCTTGGTCCTAGCCCTCTCACCTTCAAAAAC
TTGGATCAACACTCCAGGCTGGTTGTCCGAATAAGTTGAGAAGACCTGTTCCTTCTTGGTTGGA
ATGGTTGTGTTTCTTTGAATCAAAGTGGTCATGACACCACCAGCAGTTTCAAGACCAAGGGAGA
GAGGTGTGACATCAAGCAAGAGAAGGTCTTGGACCTTTTCGTTTCCTTCACCGCTTAGGATCGC
AGCCTGAACAGCTGCACCATAAGCTACAGCCTCATCAGGGTTGATAGACTTGCAAAGCTCTTTG
CCGTTGAAGAAGTCCTGAAGCAATTGCTGAACCTTAGGGATACGGGTGGATCCACCAACAAGGA
CAATCTCGTGAACAGTGCTCTTGTCCATCTTAGCATCACGGAGACACTTCTCAACAGGCTCCAT
ACACTTCCTAAAGAGATCCATGTTCATCTCTTCGAATCTAGCACGGGTGATTGGAGAATAGAAG
TCAGCTCCACCATATAAAGAGTCAATCTCGATGGTCGTTTGAGCGGTGGAAGAAAGAGTCCTCT
TTGCTCTCTCACAAGCTGTTCTCAATCTCCTGAGGGCTCTCGGTTGACCGGTGATATCCTGCTT
GTTCTTTCTCTTAAACTCTTGAACAAAATGGTTAACCATTCTGTTGTCAAAATCTTCCCCACCA
AGATGAGTATCACCAGCTGTTGCCTTCACCTCAAAGATACCCTCTTCGATTGTAAGAAGAGAGA
CATCAAAAGTACCACCACCAAGATCAAAGATCAAAACATTCTTCTCTCCAACACTTGTGGCCTT
CTTGTCAAGACCATAAGCAATGGCTGCAGCAGTGGGCTCGTTGATGATACGCAAAACATTCAAA
CCAGCGATGACACCAGCATCCTTTGTAGCCTGACGTTGAGAGTCATTGAAGTAAGCAGGAACAG
TGACGACAGCGTTCTTGACCGTAGTGCCAAGGAAAGCCTCAGCGATCTCACGCATCTTAATAAG
AACCATGGAAGAGATCTCTTCAGCAGCGAACTGTTTCTCTTCTCCCTTGTATTCGACGACAATC
ATTGGTTTCTCTGCAGTTCCGGAGATGATAGTGAAAGGCCATAACTGTCTGTCACTTTGGACAG
ATGCGTCACTGAATCTACGACCAATCAACCTCTTTGCATCTGTCACAATTAGCAAACAAAATAG
AGTTTAGTCAACCAAACAATCCCAAAACAAAACATCAACTTCAACTAAAATTCTTTGTTCAAAC
TAATGAAAAATCCTAAATTCACAGGAAGAGTTCATAATATAACGCAAACAAGTGATTCAAAAAC
TTCTAAGCAATTAAGATCATCCTATAAACCCTAAAAACTCTTACTTCAACTCAAATACGAATCA
ACAGAGCATAAGATGAGATTAACCAAACCCTATAAATTCGTACTTTAACTCAAATACGAATAAA
CAGAGCATAAAGATGAGATTTACATACCGAAAACAGTGTTAACAGGGTTCATGGCGACTTGGTT
CTTAGCAGCATCACCGATCAACCTCTCGGAGTCAGTGAAAGCAACGTACGAGGGAGTGGTTCTG
TTTCCTTGATCATTAGCGATGATCTCAACACGGTCGTGTTGCCACACTCCGACGCAAGAGTACG
TCGTACCAAGATCGATACCGATCGCAGGACCTTCTCCTTTACCAGCCATTATCACACGAAGATA
GAAAAAGCTAAGAAAAAGTTTAAGAGCAGCAAAGAGAAAGAATAGAGCTAGGTTTTTAGGTTTG
TGAAGAAAGAGCGTTGAAGTCTTGTTTTTTATAAGGCTGAGACTTGAGTTTCCAGAATGTTCTG
TAATTATTTATAACCGTTGGATTATGTTTGAGGTTGATCTGACGGTAGCTAAGTGATAGATTCC
TTTTCCAAATCCTAGGCAAATATGTTCCTGGAAAAAAAGAGGAAAAAACTGATATTGTCCAAAT
TTTGAAAAGGGAAAAAGTGATATTGTCCAAAAACTGAAAAGCGCGTGTTGAAAATTGGAAAACT
GCTCTATAACGTTCATATGTGGGGTCGATTTATTTATTACTTGACACGTAAGATTTCGTAGTAG
AGTAATGGGCCAGTAAGACATACTAAAGGCTGTCATTGGCTGTGGGCCGAGGTGAGGCTTTTCT
TTTTACTGATTGGGCATAGGTATAAGCGAAGCTATTTATTTGATTTGTCTGTTACACTACAAAG
GCTTTGAGGATAAGAAAATTCACAGTCCTACTGATTTCACTGTTTTGTATATGTTTCAAATATC
CGTAGCTTCGTATATAGTTTTGAAATAAAGCATAAAACATCAAAGTAAAAAATCCAGATAAAAT
CACAAATCCAAAGCTATAACCAAAGCATCAAGGTTGACCAAAAAAATAAAATAAATAAGCATCA
ACAACACATTCACATAGACCAACTAAATTGAATGCTTAAGATTCACTAGGCTTTTGATCAACAT
TAATTTAATAAAAACTTCCAATTTATCTCTTCAAATCTAAACCAAATTTGAAACTTCCAATTCA
TGAAAGCTTTGAGATTTTTTTTCTACTTTCTTTTCACTAATAAAAACCCAAAGAAAAAGAGATT
GATTTAATAGCTTTTTATCTCTTCAAGTCTTTTGGTCTTGCTTAAACTGGAGTTGTCACCAGAT
CTCGTCGTGGAGAACACTACATGGAGAGATCAATTTTGTTTTAGGATTTTGTGGGGGAAAAAGA
TTTAGATTTTTTTCTTTTCAACAAAACAAGGGTAAAATTGACTTTAGTCTGTGTTAGAAATGAT
AAATTCAACAAATGTCATAATAAAAAATGGGTTTCTCGTAATTGATTAATTAATTATTATCGTT
GGTTCCTTCTCTAAGTAATTTTTATGTTATGCCATTTGGGAAATACTTCCCATTTCAAACAACA
AGTCATGTTTCACCTACGAGATTGGAAGGGAACAAACACCATAACCAAAATAAGAGAGAAAATG
GCAAACTTTTAATTTTATCCGTCATCGTAGCTAAACTGGTATAGAACCAACCATTGTTCAAAAT
AGTACTAACCAAAAAACACCACAAAATGGGCTTCTTTAAAAAAGCCCAACATAAAAAGTCTTAA
CAGATCAAAAAAAAGCAAGTAAAAGAGATAGAGATAGGAGAAAGAGAGAGGTCAATGTCCAACA
AATTAGTCGACCTCCTCGATCTTAGGTCCAGCACCGCCTGAAGCAGGGGGAGCATCATCGTCCA
TACCAGAGGCACCTGGACCACCGGCTTCACCACCAGCTCCTTGGTACATCTTGGCAATGATTGG
GTTGCAGATGCTCTCCAATTCCTTCATCTTGTCTTCGAACTCATCAGCCTCAGCCAACTGGTTA
CCCTCGAGCCATTGAATCGCCTGCTCAATAGAATCCTCGATCTTCTTCTTGTCTGCAGCCGGGA
GCTTCTCACCAATCTTCTCGTCTTGGATGGTGTTCCTCATGTTGTAAGCGTAGTTCTCGAGAGC
GTTCTTGGCTTCAAC
Conservation Information
Conserved circRNAs NA
PMCS 1.031487691
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017