Detail information of Os11g0199700_circ_g.7


General Information
CircRNA Name Os11g0199700_circ_g.7
ID in PlantcircBase osa_circ_008774
Alias NA
Organism Oryza sativa
Position chr11: 4997383-5004181  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0199700
Parent gene annotation Similar to VHS and GAT domain protein. (Os11t0199700-01);Similar
to Seed protein B32E (Fragment). (Os11t0199700-02)
Parent gene strand -
Alternative splicing Os11g0199700_circ_g.8 Os11g0199700_circ_g.9
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0199700-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGGACTCTTGAAATACTCACATAAAGCGTCAGAATTTGCACTTTTGAATTCTTGTTTCCCAGG
CGTTTCTTTAGGAGCTTGAGTGTATCCTTGGCTTGTctcaaggcaggtgcagaaggggcgctag
attgaagagaagcttgtatcgctgcatcttcatagctttgacctggaggtggatatagatgtgg
ttgcctca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osi_circ_003052*
PMCS 0.187793904
Functional Information
Coding potential Y
Potential coding position 5003747-4997385(-)
Potential amino acid sequence MVKIVKKKPDLNVREKILSLIDTWQVAFGGASGRYPQYHAAYQELRNAGVDFPPREENTVPLFT
PPQTQPLRQPHLYPPPGQSYEDAAIQASLQSSAPSAPALRQAKDTLKLLKKRLGNKNSKVQILT
LYVLETLSKNCGDVVYQQIIERDILSEMVKIVKKKPDLNVREKILSLIDTWQVAFGGASGRYPQ
YHAAYQELRNAGVDFPPREENTVPLFTPPQTQPLRQPHLYPPPGQSYEDAAIQASLQSSAPSAP
ALRQAKDTLKLLKKRLGNKNSKVQILTLYVLETLSKNCGDVVYQQIIERDILSEMVKIVKKKPD
LNVREKILSLIDTWQVAFGGASGRYPQYHAAYQELRNAGVDFPPREENTVPLFTPPQTQPLRQP
HLYPPPGQSYEDAAIQASLQSSAPSAPALRQAKDTLKLLKKRLGNKNSKVQILTLYVLETLSKN
CGDVVYQQIIERDILSEMVKIVKKKPDLNVREKILSLIDTWQVAFGGASGRYPQYHAAYQELRN
AGVDFPPREENTVPLFTPPQTQPLRQPHLYPPPGQSYEDAAIQASLQSSAPSAPAL(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017