Plant Circular RNA Database

Detail information of AT5G17020_circ_g.6

			
						 General Information
					
						CircRNA Name
						AT5G17020_circ_g.6
					
						ID in PlantcircBase
						ath_circ_038728
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 5595534-5598174  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							AT5G17020						
					
						Parent gene annotation
						
							XPO1A
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT5G17020_circ_g.1 AT5G17020_circ_g.2 AT5G17020_circ_g.3 AT5G17020_circ_g.4 AT5G17020_circ_g.5 AT5G17020_circ_g.7 AT5G17020_circ_g.8 AT5G17020_circ_g.9 AT5G17020_circ_g.10 AT5G17020_circ_g.11 AT5G17020_circ_g.12 AT5G17020_circ_g.13 AT5G17020_circ_g.14 AT5G17020_circ_g.15 AT5G17020_circ_g.16 AT5G17020_circ_g.17 AT5G17020_circ_g.18 AT5G17020_circ_g.19 AT5G17020_circ_g.20 AT5G17020_circ_g.21 AT5G17020_circ_g.22 AT5G17020_circ_g.23 AT5G17020_circ_g.24 AT5G17020_circ_g.25 AT5G17020_circ_g.26 AT5G17020_circ_g.27 AT5G17020_circ_g.28 AT5G17020_circ_g.29 AT5G17020_circ_g.30 AT5G17020_circ_g.31 AT5G17020_circ_g.32 AT5G17020_circ_g.33 AT5G17020_circ_g.34 AT5G17020_circ_g.35 AT5G17020_circ_g.36 AT5G17020_circ_g.37 AT5G17020_circ_g.38 AT5G17020_circ_g.39 AT5G17020_circ_g.40 AT5G17020_circ_g.41 						
					
						Support reads
						5
					
						Tissues
						seedlings
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G17020.2:12
AT5G17020.1:13

General Information
CircRNA Name	AT5G17020_circ_g.6
ID in PlantcircBase	ath_circ_038728
Alias	NA
Organism	Arabidpsis thaliana
Position	chr5: 5595534-5598174 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	AT5G17020
Parent gene annotation	XPO1A
Parent gene strand	+
Alternative splicing	AT5G17020_circ_g.1 AT5G17020_circ_g.2 AT5G17020_circ_g.3 AT5G17020_circ_g.4 AT5G17020_circ_g.5 AT5G17020_circ_g.7 AT5G17020_circ_g.8 AT5G17020_circ_g.9 AT5G17020_circ_g.10 AT5G17020_circ_g.11 AT5G17020_circ_g.12 AT5G17020_circ_g.13 AT5G17020_circ_g.14 AT5G17020_circ_g.15 AT5G17020_circ_g.16 AT5G17020_circ_g.17 AT5G17020_circ_g.18 AT5G17020_circ_g.19 AT5G17020_circ_g.20 AT5G17020_circ_g.21 AT5G17020_circ_g.22 AT5G17020_circ_g.23 AT5G17020_circ_g.24 AT5G17020_circ_g.25 AT5G17020_circ_g.26 AT5G17020_circ_g.27 AT5G17020_circ_g.28 AT5G17020_circ_g.29 AT5G17020_circ_g.30 AT5G17020_circ_g.31 AT5G17020_circ_g.32 AT5G17020_circ_g.33 AT5G17020_circ_g.34 AT5G17020_circ_g.35 AT5G17020_circ_g.36 AT5G17020_circ_g.37 AT5G17020_circ_g.38 AT5G17020_circ_g.39 AT5G17020_circ_g.40 AT5G17020_circ_g.41
Support reads	5
Tissues	seedlings
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G17020.2:12 AT5G17020.1:13

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCGCATGGCGAAGCCTGAAGAAGTGCTTATTGTTGAAGATGAAAATGGGAACATCGTTCGTGAA
ACCATGAAGGACAATGATGTTCTTGTCCAATATAAGagagctgctgcggaccagattttgcggg
atttgcaggctaatccagatatgtggcttcaagttgtccacattctacaaaatacaaacagctt
ggatacca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1275
Transcript exons: 5595534-5595650,5595731-5595823,5595918-5595989,5596145-
5596252,5596324-5596406,5596531-5596669,5596753-5596821,
5596907-5596984,5597153-5597215,5597309-5597353,5597494-
5597601,5597735-5597833,5597974-5598174
AGAGCTGCTGCGGACCAGATTTTGCGGGATTTGCAGGCTAATCCAGATATGTGGCTTCAAGTTG
TCCACATTCTACAAAATACAAACAGCTTGGATACCAAGTTCTTTGCTCTGCAGGTTCTAGAAGG
TGTTATAAAGTATAGATGGAATGCACTGCCTGTTGAACAACGAGATGGAATGAAAAATTACATC
TCAGAGGTTATTGTACAGCTCTCGAGTAATGAAGCATCTTTCAGATCAGAAAGGCTCTATGTCA
ACAAGCTAAATGTCATTTTGGTCCAGATCGTGAAACATGATTGGCCGGCAAAGTGGACAAGCTT
CATTCCTGATCTAGTTGCAGCTGCTAAAACTAGCGAAACTATCTGCGAAAATTGCATGGCCATT
TTGAAACTCCTAAGTGAAGAGGTTTTTGATTTCTCAAGAGGAGAAATGACTCAGCAGAAGATTA
AAGAGCTGAAACAATCTCTAAACAGTGAGTTTAAACTCATTCATGAGTTATGCCTATATGTCCT
CTCAGCTTCTCAAAGACAGGATCTTATACGTGCAACACTGTCTGCATTGCATGCCTATCTTTCC
TGGATTCCATTGGGTTACATTTTTGAGTCTACTTTGCTTGAGACCCTCCTTAAATTTTTTCCTG
TGCCAGCATATAGGAACCTCACTATTCAATGTCTGACCGAGGTCGCAGCTCTTAATTTCGGGGA
CTTCTACAATGTTCAATATGTCAAAATGTATACCATATTTATAGGGCAGCTGCGGATAATTCTC
CCACCGAGTACAAAGATCCCTGAGGCATATTCCAGTGGAAGTGGTGAAGAACAAGCATTTATCC
AGAACCTGGCACTATTTTTCACTTCCTTTTTCAAGTTTCATATTCGAGTCCTAGAATCAACGCC
AGAAGTTGTCTCTTTGTTACTCGCTGGTCTAGAATATCTCATTAATATATCTTATGTTGACGAC
ACTGAAGTATTTAAGGTTTGTTTGGACTATTGGAACTCGTTGGTGTTGGAGCTATTTGATGCGC
ATCATAATTCTGATAACCCTGCAGTAAGTGCAAGCCTGATGGGTTTGCAGCCTTTCCTTCCTGG
TATGGTTGATGGCCTTGGTTCTCAAGTCATGCAGCGGCGTCAACTTTATTCTCACCCAATGTCC
AAATTAAGAGGGTTAATGATTAACCGCATGGCGAAGCCTGAAGAAGTGCTTATTGTTGAAGATG
AAAATGGGAACATCGTTCGTGAAACCATGAAGGACAATGATGTTCTTGTCCAATATAAG
						
					

						Genomic sequence
						
							AGAGCTGCTGCGGACCAGATTTTGCGGGATTTGCAGGCTAATCCAGATATGTGGCTTCAAGTTG
TCCACATTCTACAAAATACAAACAGCTTGGATACCAAGTTCTTTGCTCTGCAGGTCAGTTTTAG
TTCCTTATGCAGTTGTAAATTAAAACTGTTCTGTTGAGATACTTTACTCTTTTTGGCATCCACT
CTCAGGTTCTAGAAGGTGTTATAAAGTATAGATGGAATGCACTGCCTGTTGAACAACGAGATGG
AATGAAAAATTACATCTCAGAGGTTATTGTACAGGTATATACTTTTGGAGGCTTTATTACCTTG
TTCTCTGGATATAACTGGGAAGCTTAGTTAACAGAACTGTTTTGATAATGAGTTTACCTTGTAG
CTCTCGAGTAATGAAGCATCTTTCAGATCAGAAAGGCTCTATGTCAACAAGCTAAATGTCATTT
TGGTCCAGGTATATTCAGCACTCCCTGATAATAATATTCAATGCGTTTATTAGTTGCACTTCTC
TTGTCTCTTTGGTTTCAGTAGCTGATACTTACAAACTTCATTCCAACCCGTAGACTTATTTTAT
CTTCTGGCATAACATATGTTGTGATAAATGCACAGATCGTGAAACATGATTGGCCGGCAAAGTG
GACAAGCTTCATTCCTGATCTAGTTGCAGCTGCTAAAACTAGCGAAACTATCTGCGAAAATTGC
ATGGCCATTTTGAAAGTAAGAATCTTTACATGATATCATAATCAGTTCTCACTGGAATATTTTA
AACATTTTCTTCCTTTATTTAGCTCCTAAGTGAAGAGGTTTTTGATTTCTCAAGAGGAGAAATG
ACTCAGCAGAAGATTAAAGAGCTGAAACAATCTCTAAACAGGTCTATTTGAGAATCTCAATTTT
AGCATAGTAATTATTAGTTTTCAATCTTTATTATCGTGTATATGTTGATTAAGTGACGTTGTAT
CTCATTATTTACCTATTTGTGCTTTTTTTATGTGCAGTGAGTTTAAACTCATTCATGAGTTATG
CCTATATGTCCTCTCAGCTTCTCAAAGACAGGATCTTATACGTGCAACACTGTCTGCATTGCAT
GCCTATCTTTCCTGGATTCCATTGGGTTACATTTTTGAGTCTACTTTGGTAATAGACTTCAAAT
AATTTATAGATTGATGTTAATTGGTACCACAATATGTTCTTCTGATAGCTGCTCTGGTTATTTA
CAGCTTGAGACCCTCCTTAAATTTTTTCCTGTGCCAGCATATAGGAACCTCACTATTCAATGTC
TGACCGAGGTACCTCAGTTTTTAAGTTCAGTTTTTCCTAATGTTAATTGAATGTATTATTTATT
TCTCTATTGGCTCGAATTTTGTCGATCAGGTCGCAGCTCTTAATTTCGGGGACTTCTACAATGT
TCAATATGTCAAAATGTATACCATATTTATAGGGCAGCTGCGGGTAAATTAATCGTCTTCTTGT
TATTTATTTATTTTTGTCTTTTAGTTCATTGTATTATTAAGAATGATTTTTCTTTCATTCTTAT
TAAGTTAAAGTAGTGAATTTGGTCTGCTTCTTGTTTGTCTTGGCTTCTTGCCTGATGGTCTACA
CTTGTTCTCGTACTTGCAGATAATTCTCCCACCGAGTACAAAGATCCCTGAGGCATATTCCAGT
GGAAGTGGTGAAGAACAAGTAAGTATTTTCTGCACGCTTGGTTTTAAGGTAGATCGTTCATTTG
AATAACTTATCAAGGTTATGACTCGGAATTTTATGTGTCACCTCTAGGCATTTATCCAGAACCT
GGCACTATTTTTCACTTCCTTTTTCAAGGTAATTATTTTTCTTTGTTGAGTTAGATATCTCATG
TTGGGTTTATGGAAATTTTGATATGTATAATGATTTGTGTTAATGCTTCCAGTAATTATTGTTT
CATCATCTATTTCTTAACTATTTCACTACTATCTCTGCAGTTTCATATTCGAGTCCTAGAATCA
ACGCCAGAAGTTGTCTCTTTGTTACTCGCTGGTCTAGAATATCTCATTAATATATCTTATGTTG
ACGACACTGAAGTATTTAAGGTACCTAAATTGTCTTTGTTAATATGATTGCTGTTGATAGAGTT
GTATGTTAATTTTTTCCTTAATTATATTCTTATGTGCTTTTGTTCGTGTCTGAAAGATGACGTT
TTCTGCTTGCTTGTGGATTGAGCAGGTTTGTTTGGACTATTGGAACTCGTTGGTGTTGGAGCTA
TTTGATGCGCATCATAATTCTGATAACCCTGCAGTAAGTGCAAGCCTGATGGGTTTGCAGGTAC
GTTGGATTCCTTGACTAATATGATCAATTTTTTACATTTATTTAAGGTTGATACTATAGTTATA
TATTGTATTGGTTAAACTTTCCTTGCTTTGATTTGGTTACTCACCTTGGGCGTTGACTTGCAAT
TTTCCCAGCCTTTCCTTCCTGGTATGGTTGATGGCCTTGGTTCTCAAGTCATGCAGCGGCGTCA
ACTTTATTCTCACCCAATGTCCAAATTAAGAGGGTTAATGATTAACCGCATGGCGAAGCCTGAA
GAAGTGCTTATTGTTGAAGATGAAAATGGGAACATCGTTCGTGAAACCATGAAGGACAATGATG
TTCTTGTCCAATATAAG
						
					

			
		

Sequences
Splice junction sequence	CCGCATGGCGAAGCCTGAAGAAGTGCTTATTGTTGAAGATGAAAATGGGAACATCGTTCGTGAA ACCATGAAGGACAATGATGTTCTTGTCCAATATAAGagagctgctgcggaccagattttgcggg atttgcaggctaatccagatatgtggcttcaagttgtccacattctacaaaatacaaacagctt ggatacca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1275 Transcript exons: 5595534-5595650,5595731-5595823,5595918-5595989,5596145- 5596252,5596324-5596406,5596531-5596669,5596753-5596821, 5596907-5596984,5597153-5597215,5597309-5597353,5597494- 5597601,5597735-5597833,5597974-5598174 AGAGCTGCTGCGGACCAGATTTTGCGGGATTTGCAGGCTAATCCAGATATGTGGCTTCAAGTTG TCCACATTCTACAAAATACAAACAGCTTGGATACCAAGTTCTTTGCTCTGCAGGTTCTAGAAGG TGTTATAAAGTATAGATGGAATGCACTGCCTGTTGAACAACGAGATGGAATGAAAAATTACATC TCAGAGGTTATTGTACAGCTCTCGAGTAATGAAGCATCTTTCAGATCAGAAAGGCTCTATGTCA ACAAGCTAAATGTCATTTTGGTCCAGATCGTGAAACATGATTGGCCGGCAAAGTGGACAAGCTT CATTCCTGATCTAGTTGCAGCTGCTAAAACTAGCGAAACTATCTGCGAAAATTGCATGGCCATT TTGAAACTCCTAAGTGAAGAGGTTTTTGATTTCTCAAGAGGAGAAATGACTCAGCAGAAGATTA AAGAGCTGAAACAATCTCTAAACAGTGAGTTTAAACTCATTCATGAGTTATGCCTATATGTCCT CTCAGCTTCTCAAAGACAGGATCTTATACGTGCAACACTGTCTGCATTGCATGCCTATCTTTCC TGGATTCCATTGGGTTACATTTTTGAGTCTACTTTGCTTGAGACCCTCCTTAAATTTTTTCCTG TGCCAGCATATAGGAACCTCACTATTCAATGTCTGACCGAGGTCGCAGCTCTTAATTTCGGGGA CTTCTACAATGTTCAATATGTCAAAATGTATACCATATTTATAGGGCAGCTGCGGATAATTCTC CCACCGAGTACAAAGATCCCTGAGGCATATTCCAGTGGAAGTGGTGAAGAACAAGCATTTATCC AGAACCTGGCACTATTTTTCACTTCCTTTTTCAAGTTTCATATTCGAGTCCTAGAATCAACGCC AGAAGTTGTCTCTTTGTTACTCGCTGGTCTAGAATATCTCATTAATATATCTTATGTTGACGAC ACTGAAGTATTTAAGGTTTGTTTGGACTATTGGAACTCGTTGGTGTTGGAGCTATTTGATGCGC ATCATAATTCTGATAACCCTGCAGTAAGTGCAAGCCTGATGGGTTTGCAGCCTTTCCTTCCTGG TATGGTTGATGGCCTTGGTTCTCAAGTCATGCAGCGGCGTCAACTTTATTCTCACCCAATGTCC AAATTAAGAGGGTTAATGATTAACCGCATGGCGAAGCCTGAAGAAGTGCTTATTGTTGAAGATG AAAATGGGAACATCGTTCGTGAAACCATGAAGGACAATGATGTTCTTGTCCAATATAAG
Genomic sequence	AGAGCTGCTGCGGACCAGATTTTGCGGGATTTGCAGGCTAATCCAGATATGTGGCTTCAAGTTG TCCACATTCTACAAAATACAAACAGCTTGGATACCAAGTTCTTTGCTCTGCAGGTCAGTTTTAG TTCCTTATGCAGTTGTAAATTAAAACTGTTCTGTTGAGATACTTTACTCTTTTTGGCATCCACT CTCAGGTTCTAGAAGGTGTTATAAAGTATAGATGGAATGCACTGCCTGTTGAACAACGAGATGG AATGAAAAATTACATCTCAGAGGTTATTGTACAGGTATATACTTTTGGAGGCTTTATTACCTTG TTCTCTGGATATAACTGGGAAGCTTAGTTAACAGAACTGTTTTGATAATGAGTTTACCTTGTAG CTCTCGAGTAATGAAGCATCTTTCAGATCAGAAAGGCTCTATGTCAACAAGCTAAATGTCATTT TGGTCCAGGTATATTCAGCACTCCCTGATAATAATATTCAATGCGTTTATTAGTTGCACTTCTC TTGTCTCTTTGGTTTCAGTAGCTGATACTTACAAACTTCATTCCAACCCGTAGACTTATTTTAT CTTCTGGCATAACATATGTTGTGATAAATGCACAGATCGTGAAACATGATTGGCCGGCAAAGTG GACAAGCTTCATTCCTGATCTAGTTGCAGCTGCTAAAACTAGCGAAACTATCTGCGAAAATTGC ATGGCCATTTTGAAAGTAAGAATCTTTACATGATATCATAATCAGTTCTCACTGGAATATTTTA AACATTTTCTTCCTTTATTTAGCTCCTAAGTGAAGAGGTTTTTGATTTCTCAAGAGGAGAAATG ACTCAGCAGAAGATTAAAGAGCTGAAACAATCTCTAAACAGGTCTATTTGAGAATCTCAATTTT AGCATAGTAATTATTAGTTTTCAATCTTTATTATCGTGTATATGTTGATTAAGTGACGTTGTAT CTCATTATTTACCTATTTGTGCTTTTTTTATGTGCAGTGAGTTTAAACTCATTCATGAGTTATG CCTATATGTCCTCTCAGCTTCTCAAAGACAGGATCTTATACGTGCAACACTGTCTGCATTGCAT GCCTATCTTTCCTGGATTCCATTGGGTTACATTTTTGAGTCTACTTTGGTAATAGACTTCAAAT AATTTATAGATTGATGTTAATTGGTACCACAATATGTTCTTCTGATAGCTGCTCTGGTTATTTA CAGCTTGAGACCCTCCTTAAATTTTTTCCTGTGCCAGCATATAGGAACCTCACTATTCAATGTC TGACCGAGGTACCTCAGTTTTTAAGTTCAGTTTTTCCTAATGTTAATTGAATGTATTATTTATT TCTCTATTGGCTCGAATTTTGTCGATCAGGTCGCAGCTCTTAATTTCGGGGACTTCTACAATGT TCAATATGTCAAAATGTATACCATATTTATAGGGCAGCTGCGGGTAAATTAATCGTCTTCTTGT TATTTATTTATTTTTGTCTTTTAGTTCATTGTATTATTAAGAATGATTTTTCTTTCATTCTTAT TAAGTTAAAGTAGTGAATTTGGTCTGCTTCTTGTTTGTCTTGGCTTCTTGCCTGATGGTCTACA CTTGTTCTCGTACTTGCAGATAATTCTCCCACCGAGTACAAAGATCCCTGAGGCATATTCCAGT GGAAGTGGTGAAGAACAAGTAAGTATTTTCTGCACGCTTGGTTTTAAGGTAGATCGTTCATTTG AATAACTTATCAAGGTTATGACTCGGAATTTTATGTGTCACCTCTAGGCATTTATCCAGAACCT GGCACTATTTTTCACTTCCTTTTTCAAGGTAATTATTTTTCTTTGTTGAGTTAGATATCTCATG TTGGGTTTATGGAAATTTTGATATGTATAATGATTTGTGTTAATGCTTCCAGTAATTATTGTTT CATCATCTATTTCTTAACTATTTCACTACTATCTCTGCAGTTTCATATTCGAGTCCTAGAATCA ACGCCAGAAGTTGTCTCTTTGTTACTCGCTGGTCTAGAATATCTCATTAATATATCTTATGTTG ACGACACTGAAGTATTTAAGGTACCTAAATTGTCTTTGTTAATATGATTGCTGTTGATAGAGTT GTATGTTAATTTTTTCCTTAATTATATTCTTATGTGCTTTTGTTCGTGTCTGAAAGATGACGTT TTCTGCTTGCTTGTGGATTGAGCAGGTTTGTTTGGACTATTGGAACTCGTTGGTGTTGGAGCTA TTTGATGCGCATCATAATTCTGATAACCCTGCAGTAAGTGCAAGCCTGATGGGTTTGCAGGTAC GTTGGATTCCTTGACTAATATGATCAATTTTTTACATTTATTTAAGGTTGATACTATAGTTATA TATTGTATTGGTTAAACTTTCCTTGCTTTGATTTGGTTACTCACCTTGGGCGTTGACTTGCAAT TTTCCCAGCCTTTCCTTCCTGGTATGGTTGATGGCCTTGGTTCTCAAGTCATGCAGCGGCGTCA ACTTTATTCTCACCCAATGTCCAAATTAAGAGGGTTAATGATTAACCGCATGGCGAAGCCTGAA GAAGTGCTTATTGTTGAAGATGAAAATGGGAACATCGTTCGTGAAACCATGAAGGACAATGATG TTCTTGTCCAATATAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.227047744

Conservation Information
Conserved circRNAs	NA
PMCS	0.227047744

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							5595582-5598171(+)
						
					

						Potential amino acid sequence
						
							MWLQVVHILQNTNSLDTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFRS
ERLYVNKLNVILVQIVKHDWPAKWTSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEM
TQQKIKELKQSLNSEFKLIHELCLYVLSASQRQDLIRATLSALHAYLSWIPLGYIFESTLLETL
LKFFPVPAYRNLTIQCLTEVAALNFGDFYNVQYVKMYTIFIGQLRIILPPSTKIPEAYSSGSGE
EQAFIQNLALFFTSFFKFHIRVLESTPEVVSLLLAGLEYLINISYVDDTEVFKVCLDYWNSLVL
ELFDAHHNSDNPAVSASLMGLQPFLPGMVDGLGSQVMQRRQLYSHPMSKLRGLMINRMAKPEEV
LIVEDENGNIVRETMKDNDVLVQYKRAAADQILRDLQANPDMWLQVVHILQNTNSLDTKFFALQ
VLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFRSERLYVNKLNVILVQIVKHDWPAK
WTSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFKLIHELC
LYVLSASQRQDLIRATLSALHAYLSWIPLGYIFESTLLETLLKFFPVPAYRNLTIQCLTEVAAL
NFGDFYNVQYVKMYTIFIGQLRIILPPSTKIPEAYSSGSGEEQAFIQNLALFFTSFFKFHIRVL
ESTPEVVSLLLAGLEYLINISYVDDTEVFKVCLDYWNSLVLELFDAHHNSDNPAVSASLMGLQP
FLPGMVDGLGSQVMQRRQLYSHPMSKLRGLMINRMAKPEEVLIVEDENGNIVRETMKDNDVLVQ
YKRAAADQILRDLQANPDMWLQVVHILQNTNSLDTKFFALQVLEGVIKYRWNALPVEQRDGMKN
YISEVIVQLSSNEASFRSERLYVNKLNVILVQIVKHDWPAKWTSFIPDLVAAAKTSETICENCM
AILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFKLIHELCLYVLSASQRQDLIRATLSALHAY
LSWIPLGYIFESTLLETLLKFFPVPAYRNLTIQCLTEVAALNFGDFYNVQYVKMYTIFIGQLRI
ILPPSTKIPEAYSSGSGEEQAFIQNLALFFTSFFKFHIRVLESTPEVVSLLLAGLEYLINISYV
DDTEVFKVCLDYWNSLVLELFDAHHNSDNPAVSASLMGLQPFLPGMVDGLGSQVMQRRQLYSHP
MSKLRGLMINRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKRAAADQILRDLQANPDMWLQV
VHILQNTNSLDTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFRSERLYV
NKLNVILVQIVKHDWPAKWTSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKI
KELKQSLNSEFKLIHELCLYVLSASQRQDLIRATLSALHAYLSWIPLGYIFESTLLETLLKFFP
VPAYRNLTIQCLTEVAALNFGDFYNVQYVKMYTIFIGQLRIILPPSTKIPEAYSSGSGEEQAFI
QNLALFFTSFFKFHIRVLESTPEVVSLLLAGLEYLINISYVDDTEVFKVCLDYWNSLVLELFDA
HHNSDNPAVSASLMGLQPFLPGMVDGLGSQVMQRRQLYSHPMSKLRGLMINRMAKPEEVLIVED
ENGNIVRETMKDNDVLVQYK(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						responsive to heat stress
					

			
		

Functional Information
Coding potential	Y
Potential coding position	5595582-5598171(+)
Potential amino acid sequence	MWLQVVHILQNTNSLDTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFRS ERLYVNKLNVILVQIVKHDWPAKWTSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEM TQQKIKELKQSLNSEFKLIHELCLYVLSASQRQDLIRATLSALHAYLSWIPLGYIFESTLLETL LKFFPVPAYRNLTIQCLTEVAALNFGDFYNVQYVKMYTIFIGQLRIILPPSTKIPEAYSSGSGE EQAFIQNLALFFTSFFKFHIRVLESTPEVVSLLLAGLEYLINISYVDDTEVFKVCLDYWNSLVL ELFDAHHNSDNPAVSASLMGLQPFLPGMVDGLGSQVMQRRQLYSHPMSKLRGLMINRMAKPEEV LIVEDENGNIVRETMKDNDVLVQYKRAAADQILRDLQANPDMWLQVVHILQNTNSLDTKFFALQ VLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFRSERLYVNKLNVILVQIVKHDWPAK WTSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFKLIHELC LYVLSASQRQDLIRATLSALHAYLSWIPLGYIFESTLLETLLKFFPVPAYRNLTIQCLTEVAAL NFGDFYNVQYVKMYTIFIGQLRIILPPSTKIPEAYSSGSGEEQAFIQNLALFFTSFFKFHIRVL ESTPEVVSLLLAGLEYLINISYVDDTEVFKVCLDYWNSLVLELFDAHHNSDNPAVSASLMGLQP FLPGMVDGLGSQVMQRRQLYSHPMSKLRGLMINRMAKPEEVLIVEDENGNIVRETMKDNDVLVQ YKRAAADQILRDLQANPDMWLQVVHILQNTNSLDTKFFALQVLEGVIKYRWNALPVEQRDGMKN YISEVIVQLSSNEASFRSERLYVNKLNVILVQIVKHDWPAKWTSFIPDLVAAAKTSETICENCM AILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFKLIHELCLYVLSASQRQDLIRATLSALHAY LSWIPLGYIFESTLLETLLKFFPVPAYRNLTIQCLTEVAALNFGDFYNVQYVKMYTIFIGQLRI ILPPSTKIPEAYSSGSGEEQAFIQNLALFFTSFFKFHIRVLESTPEVVSLLLAGLEYLINISYV DDTEVFKVCLDYWNSLVLELFDAHHNSDNPAVSASLMGLQPFLPGMVDGLGSQVMQRRQLYSHP MSKLRGLMINRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKRAAADQILRDLQANPDMWLQV VHILQNTNSLDTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFRSERLYV NKLNVILVQIVKHDWPAKWTSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKI KELKQSLNSEFKLIHELCLYVLSASQRQDLIRATLSALHAYLSWIPLGYIFESTLLETLLKFFP VPAYRNLTIQCLTEVAALNFGDFYNVQYVKMYTIFIGQLRIILPPSTKIPEAYSSGSGEEQAFI QNLALFFTSFFKFHIRVLESTPEVVSLLLAGLEYLINISYVDDTEVFKVCLDYWNSLVLELFDA HHNSDNPAVSASLMGLQPFLPGMVDGLGSQVMQRRQLYSHPMSKLRGLMINRMAKPEEVLIVED ENGNIVRETMKDNDVLVQYK(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to heat stress

			
						 Other Information
					
						References
						Pan et al., 2017

circRNA

Detail information of AT5G17020_circ_g.6

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