Detail information of AT5G17020_circ_g.1


General Information
CircRNA Name AT5G17020_circ_g.1
ID in PlantcircBase ath_circ_038723
Alias NA
Organism Arabidpsis thaliana
Position chr5: 5595531-5600091  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene AT5G17020
Parent gene annotation XPO1A
Parent gene strand +
Alternative splicing AT5G17020_circ_g.2 AT5G17020_circ_g.3 AT5G17020_circ_g.4 AT5G17020_circ_g.5 AT5G17020_circ_g.6 AT5G17020_circ_g.7 AT5G17020_circ_g.8 AT5G17020_circ_g.9 AT5G17020_circ_g.10 AT5G17020_circ_g.11 AT5G17020_circ_g.12 AT5G17020_circ_g.13 AT5G17020_circ_g.14 AT5G17020_circ_g.15 AT5G17020_circ_g.16 AT5G17020_circ_g.17 AT5G17020_circ_g.18 AT5G17020_circ_g.19 AT5G17020_circ_g.20 AT5G17020_circ_g.21 AT5G17020_circ_g.22 AT5G17020_circ_g.23 AT5G17020_circ_g.24 AT5G17020_circ_g.25 AT5G17020_circ_g.26 AT5G17020_circ_g.27 AT5G17020_circ_g.28 AT5G17020_circ_g.29 AT5G17020_circ_g.30 AT5G17020_circ_g.31 AT5G17020_circ_g.32 AT5G17020_circ_g.33 AT5G17020_circ_g.34 AT5G17020_circ_g.35 AT5G17020_circ_g.36 AT5G17020_circ_g.37 AT5G17020_circ_g.38 AT5G17020_circ_g.39 AT5G17020_circ_g.40 AT5G17020_circ_g.41
Support reads 6
Tissues inflorescences
Exon boundary   No-No
Splicing signals   CA-TT
Number of exons covered AT5G17020.2:19
AT5G17020.1:20
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATCGTTTCTCTTTTCTCCAGGTTGGTAATATGATCCAAGCAGAATCAGATCCTCAGAAGAGA
GATGAATATCTCCAGAGGTTGATGGCACTCCCCAACcagagagctgctgcggaccagattttgc
gggatttgcaggctaatccagatatgtggcttcaagttgtccacattctacaaaatacaaacag
cttggata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGAGAGCTGCTGCGGACCAGATTTTGCGGGATTTGCAGGCTAATCCAGATATGTGGCTTCAAG
TTGTCCACATTCTACAAAATACAAACAGCTTGGATACCAAGTTCTTTGCTCTGCAGGTCAGTTT
TAGTTCCTTATGCAGTTGTAAATTAAAACTGTTCTGTTGAGATACTTTACTCTTTTTGGCATCC
ACTCTCAGGTTCTAGAAGGTGTTATAAAGTATAGATGGAATGCACTGCCTGTTGAACAACGAGA
TGGAATGAAAAATTACATCTCAGAGGTTATTGTACAGGTATATACTTTTGGAGGCTTTATTACC
TTGTTCTCTGGATATAACTGGGAAGCTTAGTTAACAGAACTGTTTTGATAATGAGTTTACCTTG
TAGCTCTCGAGTAATGAAGCATCTTTCAGATCAGAAAGGCTCTATGTCAACAAGCTAAATGTCA
TTTTGGTCCAGGTATATTCAGCACTCCCTGATAATAATATTCAATGCGTTTATTAGTTGCACTT
CTCTTGTCTCTTTGGTTTCAGTAGCTGATACTTACAAACTTCATTCCAACCCGTAGACTTATTT
TATCTTCTGGCATAACATATGTTGTGATAAATGCACAGATCGTGAAACATGATTGGCCGGCAAA
GTGGACAAGCTTCATTCCTGATCTAGTTGCAGCTGCTAAAACTAGCGAAACTATCTGCGAAAAT
TGCATGGCCATTTTGAAAGTAAGAATCTTTACATGATATCATAATCAGTTCTCACTGGAATATT
TTAAACATTTTCTTCCTTTATTTAGCTCCTAAGTGAAGAGGTTTTTGATTTCTCAAGAGGAGAA
ATGACTCAGCAGAAGATTAAAGAGCTGAAACAATCTCTAAACAGGTCTATTTGAGAATCTCAAT
TTTAGCATAGTAATTATTAGTTTTCAATCTTTATTATCGTGTATATGTTGATTAAGTGACGTTG
TATCTCATTATTTACCTATTTGTGCTTTTTTTATGTGCAGTGAGTTTAAACTCATTCATGAGTT
ATGCCTATATGTCCTCTCAGCTTCTCAAAGACAGGATCTTATACGTGCAACACTGTCTGCATTG
CATGCCTATCTTTCCTGGATTCCATTGGGTTACATTTTTGAGTCTACTTTGGTAATAGACTTCA
AATAATTTATAGATTGATGTTAATTGGTACCACAATATGTTCTTCTGATAGCTGCTCTGGTTAT
TTACAGCTTGAGACCCTCCTTAAATTTTTTCCTGTGCCAGCATATAGGAACCTCACTATTCAAT
GTCTGACCGAGGTACCTCAGTTTTTAAGTTCAGTTTTTCCTAATGTTAATTGAATGTATTATTT
ATTTCTCTATTGGCTCGAATTTTGTCGATCAGGTCGCAGCTCTTAATTTCGGGGACTTCTACAA
TGTTCAATATGTCAAAATGTATACCATATTTATAGGGCAGCTGCGGGTAAATTAATCGTCTTCT
TGTTATTTATTTATTTTTGTCTTTTAGTTCATTGTATTATTAAGAATGATTTTTCTTTCATTCT
TATTAAGTTAAAGTAGTGAATTTGGTCTGCTTCTTGTTTGTCTTGGCTTCTTGCCTGATGGTCT
ACACTTGTTCTCGTACTTGCAGATAATTCTCCCACCGAGTACAAAGATCCCTGAGGCATATTCC
AGTGGAAGTGGTGAAGAACAAGTAAGTATTTTCTGCACGCTTGGTTTTAAGGTAGATCGTTCAT
TTGAATAACTTATCAAGGTTATGACTCGGAATTTTATGTGTCACCTCTAGGCATTTATCCAGAA
CCTGGCACTATTTTTCACTTCCTTTTTCAAGGTAATTATTTTTCTTTGTTGAGTTAGATATCTC
ATGTTGGGTTTATGGAAATTTTGATATGTATAATGATTTGTGTTAATGCTTCCAGTAATTATTG
TTTCATCATCTATTTCTTAACTATTTCACTACTATCTCTGCAGTTTCATATTCGAGTCCTAGAA
TCAACGCCAGAAGTTGTCTCTTTGTTACTCGCTGGTCTAGAATATCTCATTAATATATCTTATG
TTGACGACACTGAAGTATTTAAGGTACCTAAATTGTCTTTGTTAATATGATTGCTGTTGATAGA
GTTGTATGTTAATTTTTTCCTTAATTATATTCTTATGTGCTTTTGTTCGTGTCTGAAAGATGAC
GTTTTCTGCTTGCTTGTGGATTGAGCAGGTTTGTTTGGACTATTGGAACTCGTTGGTGTTGGAG
CTATTTGATGCGCATCATAATTCTGATAACCCTGCAGTAAGTGCAAGCCTGATGGGTTTGCAGG
TACGTTGGATTCCTTGACTAATATGATCAATTTTTTACATTTATTTAAGGTTGATACTATAGTT
ATATATTGTATTGGTTAAACTTTCCTTGCTTTGATTTGGTTACTCACCTTGGGCGTTGACTTGC
AATTTTCCCAGCCTTTCCTTCCTGGTATGGTTGATGGCCTTGGTTCTCAAGTCATGCAGCGGCG
TCAACTTTATTCTCACCCAATGTCCAAATTAAGAGGGTTAATGATTAACCGCATGGCGAAGCCT
GAAGAAGTGCTTATTGTTGAAGATGAAAATGGGAACATCGTTCGTGAAACCATGAAGGACAATG
ATGTTCTTGTCCAATATAAGGTATCAATTCTTGTCCAGTTCATACTGCTTTTCTTCAGATGTCT
TAGATATATACCAACAGTGCGATGTTATACAAGGAATTTTTTATTTATTTGAATCCTCTTTGGA
TATCCTCTTTGATTTCTTCCCCATTTCTTGTTTGAACAAATGCAGATAATGCGGGAGACATTAA
TCTACCTCTCACACCTTGACCATGATGATACCGAGAAGCAGGTACAGTGTCACCATGATGATAC
CGGTCTATGCGTATTAATTTGTGAAATATTGAGGATTAGCAGTCTTATGATCAAGTATGCTTTT
TATCAAATGAGTTTCTCCTTGTTATAGTGTGAATTATCATATTAGTACTGCTAACTTTAGCAAT
TTTAACATGGACCTGTTATAAGATATGAGATTTTCTGGTAGATATGTAAGCTTACTTTGGTCTG
TTCCATGCTGTTTTGCTGATGTGAACTTCGGATTGTTCCTTTAAAAGATGTTGAGGAAGCTAAA
CAAACAATTAAGTGGGGAGGAATGGGCATGGAACAATTTGAACACTTTGTGCTGGGCTATTGGG
TCTATTTCCGGATCTATGGCAGAAGATCAGGTAAAATCTTTTGCTATGCTTCACCTGACTGCAA
ATTCTTTTCATAACCGTAGAAGTTCTTGTTTGTAATGCTGCACCTCTCCATCTGTGGGCTAGTA
TGCCATAACTTAATTCAAGAAAGTTTGACAGTGTCAACCTTCAATGTTAATTGTTTCTTTCATT
AACCTCCCATTTCATGAGATATCATTATCGGCCTGACTGCTCCATACTTTGCTCTGGAAGGTTT
ACATTGTTAATTCTGTGCTAACAATTGTTAAATTCCATTTTTTCTTCAGGAAAACAGGTTTTTG
GTGATGGTCATTCGTGATTTGTTGAATTTATGTGAAATTACCAAGGGAAAAGACAATAAAGCCG
TTATTGCAAGCAACATCATGTAAGTTTGTTACTACAGCTGAATTTCTGCCTAGGTTGTTGTACT
TCTATCATCTTATATTTTCTATTTCTTTCAAGGCGATGTTAGATTTTTTTTGGTTAAGTATGAC
CTCTCTGTTCTGCTGTCGCTGGGTTGCAGGTATGTCGTTGGCCAGTATCCAAGATTCTTAAGGG
CCCATTGGAAGTTTTTGAAGACAGTTGTGAACAAGTTGTTTGAATTCATGCATGAAACACATCC
TGGTGTTCAGGTAGCTGGTCCCAATCTTTATAGTTTATATATTATGAGATACAGTTTTCCAGGT
GGAATCTCAGATAAAATGATGTGTTATTCGCTGTTAAAATCCATGAATAATATATTTTTAAGCT
CTTGGAGAATATATTGGTAGCAAAAATATGCTCAAGTTGTTAATTACGGTGCTGTAGTTTATTT
ATAATCGTCTCAAGCTATCTGAAGTCTCTTTTTTGACTGAATATTCTTTCATAGATTTATAGAC
CTTGCACCTTCCCAATCACAGATACTTGATACTTATGTTTCCCTTTCAGGACATGGCCTGTGAT
ACATTCTTGAAAATAGTTCAAAAGTGCAAGCGAAAATTCGTTATTGTACAGGTATGTATTGCTG
TATTTTTATCCACCGTTAGGTTTTAGTATATCCATTGTCTTCTGAATGAGATATTAATTACAGC
TCGTTGTTCTTTCAGGTTGGAGAGAATGAACCATTTGTATCTGAACTTCTAACAGGCCTTGCAA
CAACTGTTCAAGATCTTGAGCCTCATCAAATACACTCATTTTATGAATCAGTAAGTTTTCCAGA
AATATTATTCGCATGCCAATCAGAGCAAATTTTCCTGTTGTGATCTCATCGTTTCTCTTTTCTC
CAGGTTGGTAATATGATCCAAGCAGAATCAGATCCTCAGAAGAGAGATGAATATCTCCAGAGGT
TGATGGCACTCCCCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.193455495
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017