Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | BGIOSGA007157_circ_g.1 |
| ID in PlantcircBase | osi_circ_003652 |
| Alias | 2:2354762|2358804 |
| Organism | Oryza sativa ssp. indica |
| Position | chr2: 2354762-2358804 JBrowse» |
| Reference genome | Oryza_indica.ASM465v1.42 |
| Type | e-circRNA |
| Identification method | find_circ |
| Parent gene | BGIOSGA007157 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | BGIOSGA007157_circ_g.2 BGIOSGA007157_circ_g.3 BGIOSGA007157_circ_g.4 BGIOSGA007157_circ_g.5 |
| Support reads | NA |
| Tissues | leaf |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | BGIOSGA007157-TA:9 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
2354773-2358677(-) 2354766-2358708(-) 2358801-2358677(-) |
| Potential amino acid sequence |
MVHGRMWCHCRMVYLPMCYIYGKRFVGPVTPIILELRKELYEVPYNEVDWDKARNLCAKEDLYY PHPFMQDVLWATLHKFVEPAMLRWPGNKLREKALDTVMQHIHYEDENTRYICIGPVNKVLNMLA CWIEDPNSEAFKLHIPRVHDYLWIAEDGMKMQGYNGSQLWDTAFTVQAIVATGLIEEFGPTLKL AHGYIKKTQVIDDCPGDLSQWYRHISKGAWPFSTADHGWPISDCTAEGLKAALLLSKISPDIVG EAVEVNRLYDSVNCLMSYMNDNGGFATYELTRSYAWLELINPAETFGDIVIDYPYVECTSAAIQ ALTAFKKLYPGHRKSEIDNCISKAASFIEGIQKSDGSWANVVSLPDGLFAYVLHLWKEVCGPSY TNYIGIKKGTLRSTLQ*(-) MGECGVIAGWFICLCVTFMERGLWAQLHQLYWN*(-) MWCHCRMVYLPMCYIYGKRFVGPVTPIILELRKELYEVPYNEVDWDKARNLCAKEDLYYPHPFM QDVLWATLHKFVEPAMLRWPGNKLREKALDTVMQHIHYEDENTRYICIGPVNKVLNMLACWIED PNSEAFKLHIPRVHDYLWIAEDGMKMQGYNGSQLWDTAFTVQAIVATGLIEEFGPTLKLAHGYI KKTQVIDDCPGDLSQWYRHISKGAWPFSTADHGWPISDCTAEGLKAALLLSKISPDIVGEAVEV NRLYDSVNCLMSYMNDNGGFATYELTRSYAWLELINPAETFGDIVIDYPYVECTSAAIQALTAF KKLYPGHRKSEIDNCISKAASFIEGIQKSDGSWANVVSLPDGLFAYVLHLWKEVCGPSYTNYIG IKKGTLRSTLQ*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Huang et al., 2021 |