Detail information of BGIOSGA007157_circ_g.1


General Information
CircRNA Name BGIOSGA007157_circ_g.1
ID in PlantcircBase osi_circ_003652
Alias 2:2354762|2358804
Organism Oryza sativa ssp. indica
Position chr2: 2354762-2358804  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA007157
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA007157_circ_g.2 BGIOSGA007157_circ_g.3 BGIOSGA007157_circ_g.4 BGIOSGA007157_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA007157-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTAATTCCAATATAATTGGTGTAACTGGGCCCACAAACCTCTTTCCATAAATGTAACACATAG
GCAAATAAACCATCCGGCAATGACACCACATTCGCCcatgaaccatcgcttttttgaataccct
caataaagctagcagctttgcttatacagttgtctatttcactcttgcggtgtccagggtagag
ctttttaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGAACCATCGCTTTTTTGAATACCCTCAATAAAGCTAGCAGCTTTGCTTATACAGTTGTCTA
TTTCACTCTTGCGGTGTCCAGGGTAGAGCTTTTTAAATGCTGTCAGGGCCTGAATTGCTGCTGA
AGTGCATTCCACATAACTATAAATTTTATACACATACAAAGGAGAGAAGGAAAGAAAGATCAGT
TCACCTTCTACATGGCAAAGCAAGAAAAGAGGACAATGGATGGGTTGTAATGTCTTACGGATAA
TCAATCACAATGTCCCCAAAGGTCTCAGCAGGATTGATAAGCTGGAAAAGTTCAATAACGCGTG
TCAATATTCATGAAACATAGTCAACAGTCGCATGGAAGGATGTTCCATAGTCAATATAAAAATA
TTACAGCCAATGGTTAATTGTCCTTTTCAAACAAAGAAAGCATCTAATCAAAGAGCTCAACAAA
TCTTTATTATATTGAACAAGATTACAAGAACAATTAACAAATTTTTAGGTGCCATCTTTTGAGT
CAGCAACTTCCCAGTTTTGATGTCAGCGCAGAAATTGACTTGCAGCACTGCTTGCCTAGACAAC
AAATAAGAGAAGGATAGTCCTCAAATAAGATAATTATACTCACCTCCAGCCAGGCATAAGACCT
TGTGAGTTCATATGTTGCAAATCCACCATTATCATTCTGTCAAGAGTATAAGGATCTGTAAGGT
AAGGTTCCTCCCAAAGGAACATGCATGTGATATATTTAAAACACCAATTAAAATACACAAGAGA
ATGGGGGAGCTATTGGCAACAAAACTTTGTGGAGCACTGGAACTTCAAAACTTTTTTTTTTTGA
AGAAATGATTATATGTCGTACTTCAACAAATATAGTTTGCCATAGTTCTATGTATCTTTAGAGA
ATAGTTGAGTGGAGAACCCATCAAACCTGAATGCCCGGTACAACAAAGTAAGGCTGCATGCATT
AGTAACTCTTCCTTCAGCCATTAAACTGCTATATTAGAGACACTTTATAGCCATGACAAATTAG
ACGTCTTATGATAATTGATAAGCACAAAATTATAATGTGACGGATGCCTTTTCATACATAAGGG
TACTTGCAGATTCAATTGTTAAACAGGAGTCCATTTACCACATCCCAAATTTTAATTATCAACT
GAAAAGCAGATCTCCAATATTCTAAGTTTCTAATGCATATTAATCAGGGTTGAGAAGCAAAAAA
AATCGTTTCGGTATCCTACAGAAATACGAGGTGCTTAAAAAAGGGACAAGACAAACATCTTCTC
TGTCCTTGTTCTGAATGCAAAAGGAGCACTTGAATATAGGCATACACTATATGATGCTTACTGA
ACTGCTGCTCCAAAGCTTCATTTTTTTTATATATTATTCATGTTACATATGAAATGTTAAAATG
ACATGAGAGGTTTACAATCACCCTTAAATATGAAGACTGATTAAAACTTACCATGTATGACATC
AAACAATTGACAGAATCATACAGTCTATTAACTTCCACTGCTTCGCCAACAATATCTGGAGAAA
TCTTCGATAGCAATAATGCCGCCTAATAATAAAACAAAACGAGAACAGTTCAAACTATTACAAT
GTCAAGAATACCAGCAGACAATTGCTATGGAACAGACTAAACTTTACAGATAAGATCATAAGAG
AATCTACAATGGTTCTTAATAACTATTTCTCATGCATACCAGAGAGTTTATATATGCTAGAAGA
GTAGAAGAACAATATTTTCTCAAGCTTGAAAGATAAAATTTACCTTAAGTCCTTCTGCAGTGCA
ATCTGATATAGGCCAACCATGATCAGCAGTAGAAAAGGGCCATGCACCTTTAGATATGTGGCGG
TACCACTGACTAAGATCTCCAGGGCAGTCATCGATAACCTTTCAGGATAAAAGCCACAGGTAAG
TAATGAGATGGCTTGAAATGTTGATTAGTATAATCGTATAAGGGAACATGCATGAGGCATGCAC
CTGCGTTTTCTTTATGTAGCCATGTGCTAGTTTAAGAGTAGGACCAAATTCTTCAATGAGGCCA
GTAGCCACTATAGCTTGAACTGTGAAAGCTGTGTCCCACAGCTGGCTTCCATTATAACCCTACA
GCGGTCACAAAAAGAATCTATAGTTAAAGTAAACAGAACACACTTGATGCAATGCTTCTCTAAA
ATTATGCTATGTTAAAAACTTCATTGGCAGAAATTATGCCAAAACAATTTTCCAATGGCATCAA
TAGACAGTAAATCACACTTGTTCAATAGGTGTCTTGTGCCAAAGTTACCAACTTTCTTGTTGGA
AGTTAGAGTAAAGAAAAAAGGTGACCTGCATTTTCATGCCATCTTCTGCAATCCATAGGTAATC
GTGGACTCTTGGAATGTGGAGTTTGAATGCCTCTGAGTTTGGATCTTCAATCCAGCAAGCAAGC
ATATTTAATACCTGAATAGAGAGAATAGATTTGAATGACAAGAACACAATGTATTGCCTGACAT
GACTGAGCAGTTTAATTCATCAGGTATTAAAGCATCAAGAGTAGTTACATCTTATAGCTACGGG
AGGAAGAAACAAAAAGAAACTCCATAATCTGAAGTTTAATGAACCATTCAAAAATAAATTGCTT
CTTTGCTACCTATATATGTCTTCACAGGACTATAATAGGCTTATTTTGGCAGAAATGTTCATGT
TTTAAAACAAAAGAAACATAGAAGGGGAAGAAGAATGACAGTGAACTTGCCGCTTGAGAGAAGG
TAGTGCAACTAAAACATTTTTAATCTATATAGGCCGCTTGGTGGCCACCCAAAAAAAGGGTGGT
GCGAGGAGCCATCGTCGCTACAATAAAATAGTAAACCAAGATAAAAAAAAAATGGGTGAAAATT
TAAAGGGGAATACTGTAAAACACAGTAATTATGACAGTTTCCCTCTAATTGCAGCTGCACATGT
ATTCCATTCAAAGTTGAAAATTGTAAGTGTGTACCCATATAATGGAATGGTTTCCCTTTTATGC
CTGCAGCAAGAAAAGAAAGAACGACCCACTTTCTTTTGTAATGAACCAATAAGCAATCATAGTC
TTCAAATTACCTTGTTTACTGGACCAATGCAAATATATCGGGTGTTCTCATCTTCATAATGAAT
ATGCTGCATGACAGTGTCCAAAGCTTTCTCCCTCAATTTGTTCCCAGGCCAACGCAACATAGCT
GGTTCAACAAATTTGTGGAGAGTGGCCCATAATACATCCTGCATGAATGGATGTGGATAGTACA
GATCTTCCTGCAATACAATACCAAAAAAAAAAACTTTCAGAAAGAAAAATCCAGATCTTATTAA
ACACAAAGTGATAAAAGCAAGATACATAGGATAAATTATGTAAAATTTTGGGCTTACTACAATA
ACTTTTCAAGCCATGCACGATAACAACTAAGCATAACAAAGTCCTTCAGCTTGTAAGGAGCTTA
AATCATCAGATTACGAGTCAAAGTCATGATTTCAACTATTGGCTTGTAATCGACCAGGAACAAG
AAGAAAATTTAAACTTTGGCTACTTCTAAATTTTAAATTGTACAGTCATGGTAATTGAAAGTTC
TAAGGTTATATTTATCACTTCAATAATATAATATACTTTTAAGTATTTAAAAATGATAAATAAT
ATGGTGGTCAAAATTTGTGCTCTGAAGTCAACAATGCCAATTATTTAGAAACATATGGAATACA
TTATTCAAAAAAGGCACAGTTTTTGCGTCCAAAATGTGCTCAAAGTAAGATGACAATATATTAC
TGATGATTTTTTAACTCACCTCATAAGATAATATTTTACCATACTGTTGTCAAATTATCTTATG
CACGAGAATACAACAAACATTAAGTAATTAACAAACCTTAGCACATAGATTGCGAGCCTTGTCC
CAATCAACTTCATTGTAGGGTACTTCGTAGAGTTCCTTTCTTAATTCCAATATAATTGGTGTAA
CTGGGCCCACAAACCTCTTTCCATAAATGTAACACATAGGCAAATAAACCATCCGGCAATGACA
CCACATTCGCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 2354773-2358677(-)
2354766-2358708(-)
2358801-2358677(-)
Potential amino acid sequence MVHGRMWCHCRMVYLPMCYIYGKRFVGPVTPIILELRKELYEVPYNEVDWDKARNLCAKEDLYY
PHPFMQDVLWATLHKFVEPAMLRWPGNKLREKALDTVMQHIHYEDENTRYICIGPVNKVLNMLA
CWIEDPNSEAFKLHIPRVHDYLWIAEDGMKMQGYNGSQLWDTAFTVQAIVATGLIEEFGPTLKL
AHGYIKKTQVIDDCPGDLSQWYRHISKGAWPFSTADHGWPISDCTAEGLKAALLLSKISPDIVG
EAVEVNRLYDSVNCLMSYMNDNGGFATYELTRSYAWLELINPAETFGDIVIDYPYVECTSAAIQ
ALTAFKKLYPGHRKSEIDNCISKAASFIEGIQKSDGSWANVVSLPDGLFAYVLHLWKEVCGPSY
TNYIGIKKGTLRSTLQ*(-)
MGECGVIAGWFICLCVTFMERGLWAQLHQLYWN*(-)
MWCHCRMVYLPMCYIYGKRFVGPVTPIILELRKELYEVPYNEVDWDKARNLCAKEDLYYPHPFM
QDVLWATLHKFVEPAMLRWPGNKLREKALDTVMQHIHYEDENTRYICIGPVNKVLNMLACWIED
PNSEAFKLHIPRVHDYLWIAEDGMKMQGYNGSQLWDTAFTVQAIVATGLIEEFGPTLKLAHGYI
KKTQVIDDCPGDLSQWYRHISKGAWPFSTADHGWPISDCTAEGLKAALLLSKISPDIVGEAVEV
NRLYDSVNCLMSYMNDNGGFATYELTRSYAWLELINPAETFGDIVIDYPYVECTSAAIQALTAF
KKLYPGHRKSEIDNCISKAASFIEGIQKSDGSWANVVSLPDGLFAYVLHLWKEVCGPSYTNYIG
IKKGTLRSTLQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021