Detail information of BGIOSGA007157_circ_g.3


General Information
CircRNA Name BGIOSGA007157_circ_g.3
ID in PlantcircBase osi_circ_011889
Alias Chr02:2114127_2116398(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr2: 2356532-2358804  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA007157
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA007157_circ_g.1 BGIOSGA007157_circ_g.2 BGIOSGA007157_circ_g.4 BGIOSGA007157_circ_g.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA007157-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTAATTCCAATATAATTGGTGTAACTGGGCCCACAAACCTCTTTCCATAAATGTAACACATAG
GCAAATAAACCATCCGGCAATGACACCACATTCGCCccttaagtccttctgcagtgcaatctga
tataggccaaccatgatcagcagtagaaaagggccatgcacctttagatatgtggcggtaccac
tgactaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTAAGTCCTTCTGCAGTGCAATCTGATATAGGCCAACCATGATCAGCAGTAGAAAAGGGCCA
TGCACCTTTAGATATGTGGCGGTACCACTGACTAAGATCTCCAGGGCAGTCATCGATAACCTTT
CAGGATAAAAGCCACAGGTAAGTAATGAGATGGCTTGAAATGTTGATTAGTATAATCGTATAAG
GGAACATGCATGAGGCATGCACCTGCGTTTTCTTTATGTAGCCATGTGCTAGTTTAAGAGTAGG
ACCAAATTCTTCAATGAGGCCAGTAGCCACTATAGCTTGAACTGTGAAAGCTGTGTCCCACAGC
TGGCTTCCATTATAACCCTACAGCGGTCACAAAAAGAATCTATAGTTAAAGTAAACAGAACACA
CTTGATGCAATGCTTCTCTAAAATTATGCTATGTTAAAAACTTCATTGGCAGAAATTATGCCAA
AACAATTTTCCAATGGCATCAATAGACAGTAAATCACACTTGTTCAATAGGTGTCTTGTGCCAA
AGTTACCAACTTTCTTGTTGGAAGTTAGAGTAAAGAAAAAAGGTGACCTGCATTTTCATGCCAT
CTTCTGCAATCCATAGGTAATCGTGGACTCTTGGAATGTGGAGTTTGAATGCCTCTGAGTTTGG
ATCTTCAATCCAGCAAGCAAGCATATTTAATACCTGAATAGAGAGAATAGATTTGAATGACAAG
AACACAATGTATTGCCTGACATGACTGAGCAGTTTAATTCATCAGGTATTAAAGCATCAAGAGT
AGTTACATCTTATAGCTACGGGAGGAAGAAACAAAAAGAAACTCCATAATCTGAAGTTTAATGA
ACCATTCAAAAATAAATTGCTTCTTTGCTACCTATATATGTCTTCACAGGACTATAATAGGCTT
ATTTTGGCAGAAATGTTCATGTTTTAAAACAAAAGAAACATAGAAGGGGAAGAAGAATGACAGT
GAACTTGCCGCTTGAGAGAAGGTAGTGCAACTAAAACATTTTTAATCTATATAGGCCGCTTGGT
GGCCACCCAAAAAAAGGGTGGTGCGAGGAGCCATCGTCGCTACAATAAAATAGTAAACCAAGAT
AAAAAAAAAATGGGTGAAAATTTAAAGGGGAATACTGTAAAACACAGTAATTATGACAGTTTCC
CTCTAATTGCAGCTGCACATGTATTCCATTCAAAGTTGAAAATTGTAAGTGTGTACCCATATAA
TGGAATGGTTTCCCTTTTATGCCTGCAGCAAGAAAAGAAAGAACGACCCACTTTCTTTTGTAAT
GAACCAATAAGCAATCATAGTCTTCAAATTACCTTGTTTACTGGACCAATGCAAATATATCGGG
TGTTCTCATCTTCATAATGAATATGCTGCATGACAGTGTCCAAAGCTTTCTCCCTCAATTTGTT
CCCAGGCCAACGCAACATAGCTGGTTCAACAAATTTGTGGAGAGTGGCCCATAATACATCCTGC
ATGAATGGATGTGGATAGTACAGATCTTCCTGCAATACAATACCAAAAAAAAAAACTTTCAGAA
AGAAAAATCCAGATCTTATTAAACACAAAGTGATAAAAGCAAGATACATAGGATAAATTATGTA
AAATTTTGGGCTTACTACAATAACTTTTCAAGCCATGCACGATAACAACTAAGCATAACAAAGT
CCTTCAGCTTGTAAGGAGCTTAAATCATCAGATTACGAGTCAAAGTCATGATTTCAACTATTGG
CTTGTAATCGACCAGGAACAAGAAGAAAATTTAAACTTTGGCTACTTCTAAATTTTAAATTGTA
CAGTCATGGTAATTGAAAGTTCTAAGGTTATATTTATCACTTCAATAATATAATATACTTTTAA
GTATTTAAAAATGATAAATAATATGGTGGTCAAAATTTGTGCTCTGAAGTCAACAATGCCAATT
ATTTAGAAACATATGGAATACATTATTCAAAAAAGGCACAGTTTTTGCGTCCAAAATGTGCTCA
AAGTAAGATGACAATATATTACTGATGATTTTTTAACTCACCTCATAAGATAATATTTTACCAT
ACTGTTGTCAAATTATCTTATGCACGAGAATACAACAAACATTAAGTAATTAACAAACCTTAGC
ACATAGATTGCGAGCCTTGTCCCAATCAACTTCATTGTAGGGTACTTCGTAGAGTTCCTTTCTT
AATTCCAATATAATTGGTGTAACTGGGCCCACAAACCTCTTTCCATAAATGTAACACATAGGCA
AATAAACCATCCGGCAATGACACCACATTCGCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021