Detail information of Os11g0525700_circ_g.3


General Information
CircRNA Name Os11g0525700_circ_g.3
ID in PlantcircBase osa_circ_009474
Alias NA
Organism Oryza sativa
Position chr11: 19072591-19073673  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os11g0525700
Parent gene annotation Development and cell death domain domain containing protein. (Os
11t0525700-01)
Parent gene strand +
Alternative splicing Os11g0525700_circ_g.1 Os11g0525700_circ_g.2
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   TT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGACATTTGTGTTCCTCCTACCTCACGTTTTGTGATGTTTACTATCGAATTAAAATATTTTAAC
GAATCCTAATAATAAAATTTCATTAGTTAGCTGTATgtaattctctgtcgttgtgctatgtgtg
tttattctgcagaggaagcgggtttttgttgtgactatagttcaccaagtaatgatatatgttg
acatggtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAATTCTCTGTCGTTGTGCTATGTGTGTTTATTCTGCAGAGGAAGCGGGTTTTTGTTGTGACT
ATAGTTCACCAAGTAATGATATATGTTGACATGGTTGATTAGGATCTTTATGTCATTGCAATAC
TCACAGTGATGGTTGATGGAAATTGCAAATTTGATCTGTGATTTAGATAATCCGAAACTCATTG
TTTTGTTCTAAACTGTTGTTTTTCCCACACCATTCTTCTTCTGGTTGCTCTAGCATTTGTGGAA
TTCTTCTGTCAAATCGAACTAAGCAAAGGAAATATGAATTAGCATATCCTAGGAGTAGCATACT
ACATGTTATCCTGAATTCAAATATATGCTCGGTTTTGAAGTTCCAAGAATTCTAGCAGGTATTT
TTGTGGTGAATAATGCATTTCATCGATATAAAGGAGAAAATTGTGAATTCAAATGACCTGTTGT
ATAAAATATCCAACATGAGCAATTACTGGTATTACTGTTATCTCTGTCACATCTGTTATACAGG
GGCACATTTTGAACACATGAAGCCAAATTGGGTGATGAGTAGTTTTGCAGAATGTCTTTGTTAC
TTCCGTGATGAGTTAACTAACAGTCTATATGGCATGAAGAACCTTTACTGGTGCTTGTGAGTTG
TGACTGAGTCCAATGTTGGCCTGCTAGGTTACCTTAGACCATGCGCTTGCTTGGCTGCAGAAAC
TGATATAGTGCAGCAAAATCATGCTGGCCTATTGTAATTTAGGACTGCAAGATCTAACATTAAG
GATTAAATCAAGATATTTTTTTCCTTTTTAGCATTTACCTTATGTGGTGAACATATGGGCCCTG
AGAGAGGCCTAACATTCTCTTCACCAGAACTAATTACAGATGCAATGAATGGCACATGTTTCCA
CAACTTTATCTCTTTTAGGAGCCAGAGAGGCAGACATGTTAGGAGCCCCCCTGACATGAACTAA
TTTGTCTGCTATTAGTATTTTCCTGACATTTGTGTTCCTCCTACCTCACGTTTTGTGATGTTTA
CTATCGAATTAAAATATTTTAACGAATCCTAATAATAAAATTTCATTAGTTAGCTGTAT
Conservation Information
Conserved circRNAs osi_circ_009076
PMCS 0.10187737
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017