Detail information of Os11g0525700_circ_g.1


General Information
CircRNA Name Os11g0525700_circ_g.1
ID in PlantcircBase osa_circ_009472
Alias NA
Organism Oryza sativa
Position chr11: 19071044-19073842  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0525700
Parent gene annotation Development and cell death domain domain containing protein. (Os
11t0525700-01)
Parent gene strand +
Alternative splicing Os11g0525700_circ_g.2 Os11g0525700_circ_g.3
Support reads 6
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0525700-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATGGTGATTTCATGCCTATCCCAGAGAGTAGCCTAAGAACTGCTATAAAAGAGAATTATTCC
AATGGGAAGTTCAGCCCAGAACTTACCCTTGTGCAGgtcaaatttacaattgatggtgatttca
tgcctatcccagaaagtagcctaagaagtgctataaaagagaactattccaatgggaagttcag
ctcagaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCAAATTTACAATTGATGGTGATTTCATGCCTATCCCAGAAAGTAGCCTAAGAAGTGCTATAA
AAGAGAACTATTCCAATGGGAAGTTCAGCTCAGAACTTACCCTTGCACAGGTAAATTTTAATCA
GCATTTGTTGATACTGTGATCAGAGTAAAGATGAAACATATTCTATCTAATATTAACTTCTATA
AGTATCATAAAACATATTGTCATTTCCTTCTAAAATTCCTCCTGTGCCACTTGTGAATAAGGAG
TCAAATCGAGGTTGGGAGGGTTGCAATGTACTGACAATTCATCATGTTTGGGCTTTAAGGCATG
AAGCTTATTCTTTTCAGTGTCTTCTTTATATGACACTTCTGCGTTTTTTATTTATCTTGAACTC
AGATATTCTTTTGTTACATAGATTGAATATGTCTTTTCTGCTTGTATTTTGGCTGTTTAGGGCC
TCTTTGTTTAGGCTTAGGCTTTTAAATTAGCCTTTTGGCTTATATGATTTATAAGCCAATAGAT
TAAGAGTCCCAAGTTTAATGTTGGAGTCATACCTCTACCTCACATAAGCCAAAAAAGCTTCTCC
AACCTAGCTTTTGGCTTAACAGTGTAAGAGTGGCTTATGGCTTTAAAAAAGCCAAATGAAAAAG
CTGCAAAACGCTGCTTGTTTTCTTAGGCTTAGACTTTTCAACTCATAAGCTAGCTTATAAGCCT
AAACAAAGAGGGCCTTAGTATTGAAATTATGTTTTTTGTCCTGAGAAAAGAAATGACTGGTATA
ACACAAGAAAAACACAAATGGGGTATAATAAGAACATATAGCTCTCTCTATTATGTTATACTTG
AATCTTGACTTCTGTTAATAGTCCGGCAGCTAGCTGGAATAGGAAAGGACAATACTTTTATCTT
CCATTTCCTCCTGTGCAAAATTTTATTGGGCTCATGAACTACATAATATATTTACTTCGTTCTA
TTTCATCATTGTTGTTACTTTGTTGTAGGTTGAAAATCTGAGAACATTGTTTCGCCCAATTATT
GTGCAACCAGAACCTGGACTCCCAAATAATTTTGATGATAGGCAACCTGCTCGTCCTGCTGAGT
ACCTACCTCCTTCCACTTCTCATCCAACGCAGCCAGCCGCTTATGTGCATCATCAAACTTCTTA
TATTCCTTTTCTAACTGCTCTTCTGGTGCCACATGAAGCTAATTCATATCTATGCGTTGCAGTG
CTCCATGTCCCCTACTGCACCTTCTCTGGTGTGTGACAAACCACATTCTGCGGCAGAGAATGAT
GAGAATGGTTGCTCCAGTGGGTCCTCCATGTCATCGCCTGCTGGGTACATCTTCATGTGCAATG
GCGTGACGAAAGCTGAGTGCTACAGGCACCGGGTGATGGGCTTGCCACTGGGGAGTCTAGACGT
GGTGTCCCGGATCAGGCGTGGCACAGCGCTCTTTCTCTATGACTTCGATGCCAAGCACCTCTAT
GGGCCCTACCATGCCGATTCCAATGGTGGCCTCACACTCGTCCCGGATGCCTTCCGGGGCCGCT
TTCCTGCCCAGGTAATTCTCTGTCGTTGTGCTATGTGTGTTTATTCTGCAGAGGAAGCGGGTTT
TTGTTGTGACTATAGTTCACCAAGTAATGATATATGTTGACATGGTTGATTAGGATCTTTATGT
CATTGCAATACTCACAGTGATGGTTGATGGAAATTGCAAATTTGATCTGTGATTTAGATAATCC
GAAACTCATTGTTTTGTTCTAAACTGTTGTTTTTCCCACACCATTCTTCTTCTGGTTGCTCTAG
CATTTGTGGAATTCTTCTGTCAAATCGAACTAAGCAAAGGAAATATGAATTAGCATATCCTAGG
AGTAGCATACTACATGTTATCCTGAATTCAAATATATGCTCGGTTTTGAAGTTCCAAGAATTCT
AGCAGGTATTTTTGTGGTGAATAATGCATTTCATCGATATAAAGGAGAAAATTGTGAATTCAAA
TGACCTGTTGTATAAAATATCCAACATGAGCAATTACTGGTATTACTGTTATCTCTGTCACATC
TGTTATACAGGGGCACATTTTGAACACATGAAGCCAAATTGGGTGATGAGTAGTTTTGCAGAAT
GTCTTTGTTACTTCCGTGATGAGTTAACTAACAGTCTATATGGCATGAAGAACCTTTACTGGTG
CTTGTGAGTTGTGACTGAGTCCAATGTTGGCCTGCTAGGTTACCTTAGACCATGCGCTTGCTTG
GCTGCAGAAACTGATATAGTGCAGCAAAATCATGCTGGCCTATTGTAATTTAGGACTGCAAGAT
CTAACATTAAGGATTAAATCAAGATATTTTTTTCCTTTTTAGCATTTACCTTATGTGGTGAACA
TATGGGCCCTGAGAGAGGCCTAACATTCTCTTCACCAGAACTAATTACAGATGCAATGAATGGC
ACATGTTTCCACAACTTTATCTCTTTTAGGAGCCAGAGAGGCAGACATGTTAGGAGCCCCCCTG
ACATGAACTAATTTGTCTGCTATTAGTATTTTCCTGACATTTGTGTTCCTCCTACCTCACGTTT
TGTGATGTTTACTATCGAATTAAAATATTTTAACGAATCCTAATAATAAAATTTCATTAGTTAG
CTGTATTTTATTCTCGATATAGAAATATCAGTGACCACTTATGTTCATTTTATTTGTGCAGGTT
AAATTTACAGTTGATGGTGATTTCATGCCTATCCCAGAGAGTAGCCTAAGAACTGCTATAAAAG
AGAATTATTCCAATGGGAAGTTCAGCCCAGAACTTACCCTTGTGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.094057238
Functional Information
Coding potential Y
Potential coding position 19071072-19073839(+)
19073809-19071092(+)
19071074-19073802(-)
Potential amino acid sequence MPIPESSLRSAIKENYSNGKFSSELTLAQVENLRTLFRPIIVQPEPGLPNNFDDRQPARPCSMS
PTAPSLVCDKPHSAAENDENGCSSGSSMSSPAGYIFMCNGVTKAECYRHRVMGLPLGSLDVVSR
IRRGTALFLYDFDAKHLYGPYHADSNGGLTLVPDAFRGRFPAQVKFTVDGDFMPIPESSLRTAI
KENYSNGKFSPELTLVQVKFTIDGDFMPIPESSLRSAIKENYSNGKFSSELTLAQVENLRTLFR
PIIVQPEPGLPNNFDDRQPARPCSMSPTAPSLVCDKPHSAAENDENGCSSGSSMSSPAGYIFMC
NGVTKAECYRHRVMGLPLGSLDVVSRIRRGTALFLYDFDAKHLYGPYHADSNGGLTLVPDAFRG
RFPAQVKFTVDGDFMPIPESSLRTAIKENYSNGKFSPELTLVQVKFTIDGDFMPIPESSLRSAI
KENYSNGKFSSELTLAQVENLRTLFRPIIVQPEPGLPNNFDDRQPARPCSMSPTAPSLVCDKPH
SAAENDENGCSSGSSMSSPAGYIFMCNGVTKAECYRHRVMGLPLGSLDVVSRIRRGTALFLYDF
DAKHLYGPYHADSNGGLTLVPDAFRGRFPAQVKFTVDGDFMPIPESSLRTAIKENYSNGKFSPE
LTLVQVKFTIDGDFMPIPESSLRSAIKENYSNGKFSSELTLAQVENLRTLFRPIIVQPEPGLPN
NFDDRQPARPCSMSPTAPSLVCDKPHSAAENDENGCSSGSSMSSPAGYIFMCNGVTKAECYRHR
VMGLPLGSLDVVSRIRRGTALFLYDFDAKHLYGPYHADSNGGLTLVPDAFRGRFPAQVKFTVDG
DFMPIPESSLRTAIKENYSNGKFSPELTLVQ(+)
MGSSAQNLPLCRSNLQLMVISCLSQKVA*(+)
MKSPSIVNLTCTRVSSGLNFPLE*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017