Detail information of Os01g0944200_circ_g.2


General Information
CircRNA Name Os01g0944200_circ_g.2
ID in PlantcircBase osa_circ_005781
Alias Os_ciR588
Organism Oryza sativa
Position chr1: 41510306-41513012  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRI, circRNA_finder, find_circ
Parent gene Os01g0944200
Parent gene annotation Ribonuclease H-like domain containing protein. (Os01t0944200-01)
Parent gene strand +
Alternative splicing Os01g0944200_circ_g.1 Os01g0944200_circ_g.3 Os01g0944200_circ_g.4 Os01g0944200_circ_g.5 Os01g0944200_circ_g.6 Os01g0944200_circ_igg.1 Os01g0944200_circ_g.2 Os01g0944200_circ_g.3 Os01g0944200_circ_g.4 Os01g0944200_circ_g.5 Os01g0944200_circ_g.6 Os01g0944200_circ_g.7 Os01g0944200_circ_g.8 Os01g0944200_circ_g.9 Os01g0944200_circ_g.10 Os01g0944200_circ_g.11 Os01g0944200_circ_g.12 Os01g0944200_circ_g.13
Support reads 46/3
Tissues root/seed
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0944200-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATTGTGTGCAAAAAAGACGACTGATCTCCCCCTGCAAATGTGTACGGAGGAAGCCTATGATT
GGTATTACAACTCGTATTGATGAGCACTACACCATGgctgcgtgtgcgcggaggaaaggaatct
ttatggagccaaaatttcgcagagataggaatggaatccttacgaagccaaaatttcgcagaga
ggaggata
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 198
Transcript exons: 41510306-41510418,41512928-41513012
GCTGCGTGTGCGCGGAGGAAAGGAATCTTTATGGAGCCAAAATTTCGCAGAGATAGGAATGGAA
TCCTTACGAAGCCAAAATTTCGCAGAGAGGAGGATATCTGTTTGAGGAAAAGACGACTGATCTC
CCCCTGCAAATGTGTACGGAGGAAGCCTATGATTGGTATTACAACTCGTATTGATGAGCACTAC
ACCATG

Transcript length: 203
Transcript exons: 41510306-41510357,41512862-41513012
GCTGCGTGTGCGCGGAGGAAAGGAATCTTTATGGAGCCAAAATTTCGCAGAGGGAAACCCATGA
TGCCAAAATTTTGCAGATAGGAGATGGAGGAGATTCAGTTCATTGTGTGCAAAAAAGACGACTG
ATCTCCCCCTGCAAATGTGTACGGAGGAAGCCTATGATTGGTATTACAACTCGTATTGATGAGC
ACTACACCATG

Transcript length: 240
Transcript exons: 41510306-41510392,41512860-41513012
GCTGCGTGTGCGCGGAGGAAAGGAATCTTTATGGAGCCAAAATTTCGCAGAGATAGGAATGGAA
TCCTTACGAAGCCAAAATTTCGCAAGGAAACCCATGATGCCAAAATTTTGCAGATAGGAGATGG
AGGAGATTCAGTTCATTGTGTGCAAAAAAGACGACTGATCTCCCCCTGCAAATGTGTACGGAGG
AAGCCTATGATTGGTATTACAACTCGTATTGATGAGCACTACACCATG

Transcript length: 248
Transcript exons: 41510306-41510403,41512863-41513012
GCTGCGTGTGCGCGGAGGAAAGGAATCTTTATGGAGCCAAAATTTCGCAGAGATAGGAATGGAA
TCCTTACGAAGCCAAAATTTCGCAGAGAGGAGGAGAAACCCATGATGCCAAAATTTTGCAGATA
GGAGATGGAGGAGATTCAGTTCATTGTGTGCAAAAAAGACGACTGATCTCCCCCTGCAAATGTG
TACGGAGGAAGCCTATGATTGGTATTACAACTCGTATTGATGAGCACTACACCATG

Transcript length: 253
Transcript exons: 41510306-41510362,41511115-41511174,41512877-41513012
GCTGCGTGTGCGCGGAGGAAAGGAATCTTTATGGAGCCAAAATTTCGCAGAGATAGGTGATGTT
ACCGTTTGATGTGACGTACCTTAGTTTGTACGCGAGATTCAACAAGATGAAGGCAAAATTTTGC
AGATAGGAGATGGAGGAGATTCAGTTCATTGTGTGCAAAAAAGACGACTGATCTCCCCCTGCAA
ATGTGTACGGAGGAAGCCTATGATTGGTATTACAACTCGTATTGATGAGCACTACACCATG

Transcript length: 291
Transcript exons: 41510306-41510417,41512825-41512925,41512935-41513012
GCTGCGTGTGCGCGGAGGAAAGGAATCTTTATGGAGCCAAAATTTCGCAGAGATAGGAATGGAA
TCCTTACGAAGCCAAAATTTCGCAGAGAGGAGGATATCTGTTTGAGGAGGCCGGTGGGCAAGGC
GTCACTTATTTGCGGAGGAAAGGAAACCCATGATGCCAAAATTTTGCAGATAGGAGATGGAGGA
GATTCAGTTCATTGTGTGCAACTGATCTCCCCCTGCAAATGTGTACGGAGGAAGCCTATGATTG
GTATTACAACTCGTATTGATGAGCACTACACCATG

Genomic sequence GCTGCGTGTGCGCGGAGGAAAGGAATCTTTATGGAGCCAAAATTTCGCAGAGATAGGAATGGAA
TCCTTACGAAGCCAAAATTTCGCAGAGAGGAGGATATCTGTTTGAGGAAAAAAAGGACGGGGTC
TCCCTTCCTGCAACAGAGTACGGATGAAGTCCAACATATGATTAGTGAAGTACTACTAGTAGCC
TATTTGCTCTGCTTTCATTTCTTCTCTGGTGTTTGATTGATTGGGTGTGTTGATGATTTCTCAT
CGTTTCAAGATCCAGATGTGGTGCACCTACAGATGCAGTCTAGTTGCAAACCCTAGCTGCTAGG
CTGTGTTTAGTTCACGTCAAAATTGAAAGTTTGGTTGAAATTGGAACGATGTGACGGGAAAGTT
GTAAGTCTATGTGTGTAGGAAAGTTTTGATGTGATCGAAAAAGTTGAGATTTTAAAGAAAAATT
TTGAAACTAAACACAGCCCTAGTATCAGATCGTTAGTGTTTAATACTACTACTATTTCTTCTCG
CCCGGCGGTTTTATTTTTTTGCTTTCATTTGGTTGCTCAGTTGGACCGATGGATTTGCCGATTC
ATATTCAACATTATTATAAGTACTACTCCAAGCATGGCAACAATCAGTCTGATTGGTTGGTCGG
CTGGATTGATTGAGCTGTGGTCTGTGGATTATTATTATCATTATCCTATTTTTACTTGTAACCT
ATATTTCCCCTGGTTTACATACACAGCCAGTGCGCTTTTAGCAGTATGTTTTACATGCTTTACT
TTACATTAATCGTAATTTTTTTTTTTTTGCAGACCGCGTGATGATGTTACCGTTTGATGTGACG
TACCTTAGTTTGTACGCGAGATTCAACAAGATGAAGGTAATTAAACGAATTACTTCTCTTGTGC
TATGTCTACTACTCCTGTAGTACATGTGTTGCACTGTATTGCACTGTATTGACCCAGTAATTGG
ATTGTGAATACGCTCCATATGGGGCGTCCAATCTGGGGGACAAAAACAGGCGCCCCACATAGCT
ATTCATTCACTCATTTCTCTCTCCCGTATCTCACTCATCTCTCTAACTTATCTTCCTGCTCGTT
TTCTCTCCTCTACTTTACTCTTTCTCTCTCTCACCAAGGCTTTGATGTGAGGACGAGGGCGCAG
CGTCCCCGTCACTACTTAAAAAAACGATTTTTCATGACGACACCCTTTTATTTTTGCCGGCGGA
TTAATGAAACAAACGCTAGTAAAAACATATGGGAGGATTCTCGCTCATGAGCCGCCAGCGAAAA
CCGATTTTCGCTAGCGGAAACTTAGGAGGTACGTCATAAAAAATAACACTATTTTTTAGGCGGA
CCTCTTAAGTGTGGCGGTAGAGCACCGCTCGTAAAAAAAAATAAATCCCATTGCCCCACCACCC
ACAGCCCACCGCTCCTAACTACCCACCGCGCATTGGTTTCAATTTTCGCAAACAGTATTCTGAC
CGCTTGTGGAAAGTAAGGATTTTCACTGGCCTTTACCTGCTGGCGCGCCTGTGCAAATGTTTTT
AGGCCGTCAGTAAAAATGTTTTTTCTAGTAGTGCGTAGCACCGCCACCGAAGATGGCGATGGAG
AGGACGCCCGCAGCAGCGGCAAAGAGGAGGCGTGGGGCAGCCCATCGTGGCTAAGGAAGTTGAA
GTACGTATCACCGGGTCATCGCGTTGCAGCACTTGAGGTTGTCGAAGGAAGCCTGATCCAACTA
ACGGAGAGGAGGAAGAAGCCAGACCTAGCCAGCATTGATTTTGTGAAATTTCCAGTGTTTCAGT
CAATGCATTTTTGATGTTTCTTTTGTTGGATTGAAATGTTGTACCAAGTATTTTAATGTTGTTT
CATTATTTTGTCTTCGATTCATTGCAGATGTGTAGATATTTTTGATTCACTGCAGATGTGTTGA
TATTTCACCAAATTGAATTTGAATGTTTTGTGTGAGACCAAAATGTTTCAGGCCTAAGGCCCTA
ATTGTAGTGTATTTTTATCACTATTTCTTTCATTTAGCTCGCAATCTAAGGCTTTAAAATTCAT
TAGGTGGAACGTCTTGTTTTTGCTGTTTAAGGGCATTAGCATTGCGATGCATTGTGTGCACGTA
CTACTATGCATCTATGCCACACGGGTTGGGTGCTTTTTTATACAACTAGTAACATGTAAAAGTG
ATAAGGGCTTAGTATCACATTCCTTGCTGTGATAATTGCAAATCAAACCTTGTATTTTTCGTGG
GCTGTCCTACAGCAGACAATTCCATACTATGGTACGGTGCGCTCGCTCATAGACGGGTATCAAT
TTGATTTGTTGTTTTTACGATGCTGAACAATTTTATCTATCTGAGTTCCACCGCATAAATATGT
AAATAGAGATGTTATATCTGTGGATGGGTAACCAACGACCACTTCCATTCACGTGAAGAGTTAA
ACTAAGTTTAAATTGTACTGTCATGCATCAAAATTAATTGATCCCCCATTACGTGACACCACTT
TGAATCTTCTATCATGCCGCAGGGGCCGGTGGGCAAGGCGTCACTTATTTGCGGAGGAAAGGAA
ACCCATGATGCCAAAATTTTGCAGATAGGAGATGGAGGAGATTCAGTTCATTGTGTGCAAAAAA
GACGACTGATCTCCCCCTGCAAATGTGTACGGAGGAAGCCTATGATTGGTATTACAACTCGTAT
TGATGAGCACTACACCATG
Conservation Information
Conserved circRNAs NA
PMCS 0.362600339
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017