Plant Circular RNA Database

Detail information of Os01g0944200_circ_g.8

			
						 General Information
					
						CircRNA Name
						Os01g0944200_circ_g.8
					
						ID in PlantcircBase
						osa_circ_005793
					
						Alias
						Os01circ33404/Os_ciR6448
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 41512824-41517984  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, SMALT, Segemehl, find_circ
					
						Parent gene
						
							Os01g0944200						
					
						Parent gene annotation
						
							Ribonuclease H-like domain containing protein. (Os01t0944200-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os01g0944200_circ_g.1 Os01g0944200_circ_g.2 Os01g0944200_circ_g.3 Os01g0944200_circ_g.4 Os01g0944200_circ_g.5 Os01g0944200_circ_g.6 Os01g0944200_circ_igg.1 Os01g0944200_circ_g.2 Os01g0944200_circ_g.3 Os01g0944200_circ_g.4 Os01g0944200_circ_g.5 Os01g0944200_circ_g.6 Os01g0944200_circ_g.7 Os01g0944200_circ_g.9 Os01g0944200_circ_g.10 Os01g0944200_circ_g.11 Os01g0944200_circ_g.12 Os01g0944200_circ_g.13 						
					
						Support reads
						4/2/1
					
						Tissues
						leaf and panicle/root/shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0944200-01:2

General Information
CircRNA Name	Os01g0944200_circ_g.8
ID in PlantcircBase	osa_circ_005793
Alias	Os01circ33404/Os_ciR6448
Organism	Oryza sativa
Position	chr1: 41512824-41517984 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene	Os01g0944200
Parent gene annotation	Ribonuclease H-like domain containing protein. (Os01t0944200-01)
Parent gene strand	+
Alternative splicing	Os01g0944200_circ_g.1 Os01g0944200_circ_g.2 Os01g0944200_circ_g.3 Os01g0944200_circ_g.4 Os01g0944200_circ_g.5 Os01g0944200_circ_g.6 Os01g0944200_circ_igg.1 Os01g0944200_circ_g.2 Os01g0944200_circ_g.3 Os01g0944200_circ_g.4 Os01g0944200_circ_g.5 Os01g0944200_circ_g.6 Os01g0944200_circ_g.7 Os01g0944200_circ_g.9 Os01g0944200_circ_g.10 Os01g0944200_circ_g.11 Os01g0944200_circ_g.12 Os01g0944200_circ_g.13
Support reads	4/2/1
Tissues	leaf and panicle/root/shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0944200-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							AGGAATAGATTGGTACTCAGTATACTGGAAAAAACAGTTCCAATTCTTAGTCAGCCGCAGTTCA
GGATATCATGGAGCAGCTATCTGCGAACAATTTTTGgggccggtgggcaaggcgtcacttattt
gcggaggaaaggaaacccatgatgccaaaattttgcagataggagatggaggagattcagttca
ttgtgtgc

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 1149
Transcript exons: 41512824-41513012,41517025-41517984
GGGCCGGTGGGCAAGGCGTCACTTATTTGCGGAGGAAAGGAAACCCATGATGCCAAAATTTTGC
AGATAGGAGATGGAGGAGATTCAGTTCATTGTGTGCAAAAAAGACGACTGATCTCCCCCTGCAA
ATGTGTACGGAGGAAGCCTATGATTGGTATTACAACTCGTATTGATGAGCACTACACCATGGTG
TTTTTCGAGATCCCGGCGAGCGTGGATTCAGCACAAGGCCCAATCTTTCTTTGGAACAGTTGAG
TGTTGGCCCTGGGGACACTGCGGACTTACTGCGGAAAGTACTTCCAGGCATTCGTGATGCAAGT
AAGACCTTTGCTATCCCTGCGTTGAAGCAAGTGTTTGAGGACAGCATTCGTCCACTACTTGTTT
CAAAGTGTTTACTCATTCACCAGCCTCTTGATAAATCCATGAAAACTTTCAACCAAAGAACAAA
TAACCTGTTGAAGAAGTCTCCACGCTACCTCAGTGCCCTAGATGTGACCACAGAAAAGGAAATC
CTGCTGGAAGATGAATGGACTTTGTTCCTTGAGCACATCTTTAAACATAGGGTCATTGTTGTAG
ATGATTGGACAAAGTGCTACGGGACCGTTCAGACCTTCCTCCACTCGAGTGATGCTGAATCATG
CAGTGATTCTTTCAAGGGGGAGTGTGATGCTTCATTCTGTGAGCAAACTGGAAAGGCAAAACTT
GCCTTTGTCATCTTTAAAGAGGGTAAACTTGTCTGGGCTGAGGTTTTCCATGAGGTACCTTGCA
AGAGTGTTGTGGAGGCAGAGGCTTTGGCAGTCATAGCTCTCCTCTTCAAGCTTATTGACCTTAA
CTTGTTAAGAGGGACTGTTTGGACCGACAACAAGGTCTGTTATAATGTGCTGAATGGTGAATAT
GAGATAAAGGTTGATGATCCCAACAGGTCGCTGTTTCTGTTTCTGAGGAGTTTGAGAGGTCGCT
TTGAGTCCTTGACCCCGGTCTGGAAACCCAGAGAACTACTGCTGATCCCAGATCGTCTGGTTAG
TATGGTTGATGACCCCCTGATATCAAGGAATAGATTGGTACTCAGTATACTGGAAAAAACAGTT
CCAATTCTTAGTCAGCCGCAGTTCAGGATATCATGGAGCAGCTATCTGCGAACAATTTTTG
						
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	AGGAATAGATTGGTACTCAGTATACTGGAAAAAACAGTTCCAATTCTTAGTCAGCCGCAGTTCA GGATATCATGGAGCAGCTATCTGCGAACAATTTTTGgggccggtgggcaaggcgtcacttattt gcggaggaaaggaaacccatgatgccaaaattttgcagataggagatggaggagattcagttca ttgtgtgc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1149 Transcript exons: 41512824-41513012,41517025-41517984 GGGCCGGTGGGCAAGGCGTCACTTATTTGCGGAGGAAAGGAAACCCATGATGCCAAAATTTTGC AGATAGGAGATGGAGGAGATTCAGTTCATTGTGTGCAAAAAAGACGACTGATCTCCCCCTGCAA ATGTGTACGGAGGAAGCCTATGATTGGTATTACAACTCGTATTGATGAGCACTACACCATGGTG TTTTTCGAGATCCCGGCGAGCGTGGATTCAGCACAAGGCCCAATCTTTCTTTGGAACAGTTGAG TGTTGGCCCTGGGGACACTGCGGACTTACTGCGGAAAGTACTTCCAGGCATTCGTGATGCAAGT AAGACCTTTGCTATCCCTGCGTTGAAGCAAGTGTTTGAGGACAGCATTCGTCCACTACTTGTTT CAAAGTGTTTACTCATTCACCAGCCTCTTGATAAATCCATGAAAACTTTCAACCAAAGAACAAA TAACCTGTTGAAGAAGTCTCCACGCTACCTCAGTGCCCTAGATGTGACCACAGAAAAGGAAATC CTGCTGGAAGATGAATGGACTTTGTTCCTTGAGCACATCTTTAAACATAGGGTCATTGTTGTAG ATGATTGGACAAAGTGCTACGGGACCGTTCAGACCTTCCTCCACTCGAGTGATGCTGAATCATG CAGTGATTCTTTCAAGGGGGAGTGTGATGCTTCATTCTGTGAGCAAACTGGAAAGGCAAAACTT GCCTTTGTCATCTTTAAAGAGGGTAAACTTGTCTGGGCTGAGGTTTTCCATGAGGTACCTTGCA AGAGTGTTGTGGAGGCAGAGGCTTTGGCAGTCATAGCTCTCCTCTTCAAGCTTATTGACCTTAA CTTGTTAAGAGGGACTGTTTGGACCGACAACAAGGTCTGTTATAATGTGCTGAATGGTGAATAT GAGATAAAGGTTGATGATCCCAACAGGTCGCTGTTTCTGTTTCTGAGGAGTTTGAGAGGTCGCT TTGAGTCCTTGACCCCGGTCTGGAAACCCAGAGAACTACTGCTGATCCCAGATCGTCTGGTTAG TATGGTTGATGACCCCCTGATATCAAGGAATAGATTGGTACTCAGTATACTGGAAAAAACAGTT CCAATTCTTAGTCAGCCGCAGTTCAGGATATCATGGAGCAGCTATCTGCGAACAATTTTTG
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.319986694

Conservation Information
Conserved circRNAs	NA
PMCS	0.319986694

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							41517957-41512890(+)
41517259-41512870(+)
						
						Potential amino acid sequence
						
							MEQLSANNFWGRWARRHLFAEERKPMMPKFCR*(+)
MKTFNQRTNNLLKKSPRYLSALDVTTEKEILLEDEWTLFLEHIFKHRVIVVDDWTKCYGTVQTF
LHSSDAESCSDSFKGECDASFCEQTGKAKLAFVIFKEGKLVWAEVFHEVPCKSVVEAEALAVIA
LLFKLIDLNLLRGTVWTDNKVCYNVLNGEYEIKVDDPNRSLFLFLRSLRGRFESLTPVWKPREL
LLIPDRLVSMVDDPLISRNRLVLSILEKTVPILSQPQFRISWSSYLRTIFGAGGQGVTYLRRKG
NP*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	41517957-41512890(+) 41517259-41512870(+)
Potential amino acid sequence	MEQLSANNFWGRWARRHLFAEERKPMMPKFCR(+) MKTFNQRTNNLLKKSPRYLSALDVTTEKEILLEDEWTLFLEHIFKHRVIVVDDWTKCYGTVQTF LHSSDAESCSDSFKGECDASFCEQTGKAKLAFVIFKEGKLVWAEVFHEVPCKSVVEAEALAVIA LLFKLIDLNLLRGTVWTDNKVCYNVLNGEYEIKVDDPNRSLFLFLRSLRGRFESLTPVWKPREL LLIPDRLVSMVDDPLISRNRLVLSILEKTVPILSQPQFRISWSSYLRTIFGAGGQGVTYLRRKG NP(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os01g0944200_circ_g.8

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