Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0205000_circ_g.2 |
ID in PlantcircBase | osa_circ_018421 |
Alias | Os_ciR9091 |
Organism | Oryza sativa |
Position | chr3: 5485943-5488061 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, circRNA_finder, find_circ |
Parent gene | Os03g0205000 |
Parent gene annotation |
Ubiquitin system component Cue domain containing protein. (Os03t 0205000-01) |
Parent gene strand | - |
Alternative splicing | Os03g0205000_circ_g.1 Os03g0205000_circ_g.3 |
Support reads | 2/3 |
Tissues | root/shoot, root, seed |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os03t0205000-01:7 |
Conservation Information | |
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Conserved circRNAs | osi_circ_014027 |
PMCS | 0.347327706 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5488040-5486027(+) 5487920-5485945(-) |
Potential amino acid sequence |
MQGSILCHFLSNISNPVHQLELLFKSLEECLSRMIL*(+) MVLYRISSNKDPGAFRGESLSMKEHAALLQEKRLLDLPKLLDICAIYGHDNCKLTSSLVENAIN VQPNILDGINIVLPQFLGIFHTMQERCMKSLQALTSSGPNDSGYTQLQKDFSEVLDFVNDAIVT LDAFVDAYQPAALLFCTSFETSYGVEELLNTLPRLYDSLLPSLLHGFQVMSSSQSNGETASDII LSDIVLGIRMLSRRTVSFGWRLLEFCYLNNQLVERDVEACTKMFPAKVEDPMIRGDIIIQTLKD INREATFSQDHPGKTFLQALEKEFKLMNRIGDIRKKVAQNTSLHEFLDSYLQFRHRWYDLPHRA PKGTVAGLVVGELELCRRVFMVLYRISSNKDPGAFRGESLSMKEHAALLQEKRLLDLPKLLDIC AIYGHDNCKLTSSLVENAINVQPNILDGINIVLPQFLGIFHTMQERCMKSLQALTSSGPNDSGY TQLQKDFSEVLDFVNDAIVTLDAFVDAYQPAALLFCTSFETSYGVEELLNTLPRLYDSLLPSLL HGFQVMSSSQSNGETASDIILSDIVLGIRMLSRRTVSFGWRLLEFCYLNNQLVERDVEACTKMF PAKVEDPMIRGDIIIQTLKDINREATFSQDHPGKTFLQALEKEFKLMNRIGDIRKKVAQNTSLH EFLDSYLQFRHRWYDLPHRAPKGTVAGLVVGELELCRRVFMVLYRISSNKDPGAFRGESLSMKE HAALLQEKRLLDLPKLLDICAIYGHDNCKLTSSLVENAINVQPNILDGINIVLPQFLGIFHTMQ ERCMKSLQALTSSGPNDSGYTQLQKDFSEVLDFVNDAIVTLDAFVDAYQPAALLFCTSFETSYG VEELLNTLPRLYDSLLPSLLHGFQVMSSSQSNGETASDIILSDIVLGIRMLSRRTVSFGWRLLE FCYLNNQLVERDVEACTKMFPAKVEDPMIRGDIIIQTLKDINREATFSQDHPGKTFLQALEKEF KLMNRIGDIRKKVAQNTSLHEFLDSYLQFRHRWYDLPHRAPKGTVAGLVVGELELCRRVFMVLY RISSNKDPGAFRGESLSMKEHAALLQEKRLLDLPKLLDICAIYGHDNCKLTSSLVENAINVQPN ILDGINIVLPQFLGIFHTMQERCMKSLQALTSSGPNDSGYTQLQKDFSEVLDFVNDAIVTLDAF VDAYQPAALLFCTSFETSYGVEELLNTLPRLYDSLLPSLLHGFQVMSSSQSNGETASDIILSDI VLGIRMLSRRTVSFGWRLLEFCYLNNQLVERDVEACTKMFPAKVEDPMIRGDIIIQTLKDINRE ATFSQDHPGKTFLQALEKEFKLMNRIGDIRKK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |