Detail information of Os03g0205000_circ_g.2


General Information
CircRNA Name Os03g0205000_circ_g.2
ID in PlantcircBase osa_circ_018421
Alias Os_ciR9091
Organism Oryza sativa
Position chr3: 5485943-5488061  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, circRNA_finder, find_circ
Parent gene Os03g0205000
Parent gene annotation Ubiquitin system component Cue domain containing protein. (Os03t
0205000-01)
Parent gene strand -
Alternative splicing Os03g0205000_circ_g.1 Os03g0205000_circ_g.3
Support reads 2/3
Tissues root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0205000-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAACTGTCCCTTTGGGTGCACGATGAGGCAAGTCATACCACCGATGCCTGAATTGTAGGTAAC
TGTCCAGGAACTCATGCAGGGAAGTATTCTGTGCCActttctttcgaatatctccaatccggtt
catcaacttgaactccttttcaagagcttggaggaatgtctttccaggatgatcttgtgaaaat
gtggcttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1020
Transcript exons: 5485943-5486370,5486453-5486549,5486640-5486703,5487227-
5487340,5487521-5487615,5487726-5487787,5487902-5488061
CTTTCTTTCGAATATCTCCAATCCGGTTCATCAACTTGAACTCCTTTTCAAGAGCTTGGAGGAA
TGTCTTTCCAGGATGATCTTGTGAAAATGTGGCTTCTCTATTGATATCCTTGAGTGTTTGAATT
ATGATGTCACCCCTGATCATAGGATCTTCGACTTTAGCTGGAAACATCTTTGTACAAGCTTCAA
CATCACGCTCCACAAGTTGATTGTTCAAATAGCAGAACTCCAATAATCTCCATCCGAAACTGAC
AGTTCTCCTTGACAGCATCCTTATACCAAGAACTATGTCACTCAGTATAATGTCAGATGCAGTC
TCTCCATTGCTTTGGGAACTGGACATAACTTGAAACCCATGAAGCAAAGATGGCAACAATGAGT
CATACAATCTTGGAAGAGTGTTCAGTAGTTCCTCAACTCCATAGCTCGTCTCAAAAGAGGTACA
AAATAATAAAGCAGCAGGTTGATAAGCATCGACAAAGGCATCCAGAGTGACAATTGCATCGTTT
ACAAAATCCAACACCTCTGAGAAATCTTTCTGAAGTTGGGTATATCCACTATCATTCGGTCCAG
ATGAAGTGAGCGCCTGTAATGATTTCATGCACCTCTCCTGCATTGTGTGGAAAATGCCCAGGAA
TTGGGGAAGGACAATATTAATGCCATCCAGAATATTTGGCTGGACATTGATAGCGTTTTCAACC
AGTGAACTTGTCAATTTGCAATTGTCATGCCCATAAATAGCACAAATGTCCAACAACTTGGGTA
AATCAAGCAATCTTTTCTCCTGCAGGAGGGCTGCATGCTCCTTCATGCTAAGGGATTCACCCCT
GAATGCTCCAGGATCCTTGTTTGAAGATATGCGGTACAGGACCATAAAGACTCGACGGCAAAGC
TCAAGCTCCCCGACAACTAAGCCAGCAACTGTCCCTTTGGGTGCACGATGAGGCAAGTCATACC
ACCGATGCCTGAATTGTAGGTAACTGTCCAGGAACTCATGCAGGGAAGTATTCTGTGCCA

Genomic sequence CTTTCTTTCGAATATCTCCAATCCGGTTCATCAACTTGAACTCCTTTTCAAGAGCTTGGAGGAA
TGTCTTTCCAGGATGATCTTGTGAAAATGTGGCTTCTCTATTGATATCCTTGAGTGTTTGAATT
ATGATGTCACCCCTGATCATAGGATCTTCGACTTTAGCTGGAAACATCTTTGTACAAGCTTCAA
CATCACGCTCCACAAGTTGATTGTTCAAATAGCAGAACTCCAATAATCTCCATCCGAAACTGAC
AGTTCTCCTTGACAGCATCCTTATACCAAGAACTATGTCACTCAGTATAATGTCAGATGCAGTC
TCTCCATTGCTTTGGGAACTGGACATAACTTGAAACCCATGAAGCAAAGATGGCAACAATGAGT
CATACAATCTTGGAAGAGTGTTCAGTAGTTCCTCAACTCCATAGCTGCAAATTAAGTGGTAGAT
AAGCATCATTGCCTATTAAGGGAACAGCGAACAAATATTGTGTTGGATGAGTAGAAGCGCACCT
CGTCTCAAAAGAGGTACAAAATAATAAAGCAGCAGGTTGATAAGCATCGACAAAGGCATCCAGA
GTGACAATTGCATCGTTTACAAAATCCAACACCTGAAGGAAGTTGGATTTACAACAATATAGAA
AAATCAGATGAAAGGACAGCAGACATATCATAAACTATGCAGTATAGGTAAAACTTGCCTCTGA
GAAATCTTTCTGAAGTTGGGTATATCCACTATCATTCGGTCCAGATGAAGTGAGCGCCTAAAAT
GAATTTATTATGGTTAAGTTCTTTTTATGCATAGTTCTCCAAGATCTTCTGTAAACTACTAAAC
TGTCATCAGATCAGGAAGGTGTGAAACTACAAGATCAAGTTTATATCAATATCATAGGTCCTCA
ACTTTTAATCGTGGTGAGAAAACATACTTCAATCTCAATTTAGGATAAAAAAGAAACAGAGACA
AATTAATAGTAAACATCATAATCGTCACTTTCTATCTAACCTACCAAGCAATGTATCATGGTTG
TTGAAAGGAACTGGGAAGAAAGTATTTGAAACAATAACAGATATAACAAGTAATAACAAGTATA
TTCGTCAATAGCACAAATGAATAACCTGAATCCTTTGCAGAAAACGATAAAAGTTTTAGCATAT
GCGATTGGGACTACAGACTAAAGTGAAAACAGCTGTTATAATGATATCATATGGATGTTCATAC
CAGATAAAGGAATACAGAATCCTATAACAGCTATGTGCAGTGATTTATGAAGAAGATCACAAAA
TAACCTGTAATGATTTCATGCACCTCTCCTGCATTGTGTGGAAAATGCCCAGGAATTGGGGAAG
GACAATATTAATGCCATCCAGAATATTTGGCTGGACATTGATAGCGTTTTCAACCTACAGATAC
AGAAAATGTGCACTTGTTATTAATAAAATTATAAAAGTATTCATGCCAATGAATAGAAAAAGGT
TATCTGAGACTAAGGGAATGAATTAGAATTTGCATTTAAGTTAGCATCTGTCTGCAAAATGAAA
AGGAGAAAAACAACAACAATAATAAACACTTCAGGAACCAACCAGTGAACTTGTCAATTTGCAA
TTGTCATGCCCATAAATAGCACAAATGTCCAACAACTTGGGTAAATCAAGCAATCTTTTCTCCT
GCAGGAGGGCTACAACCGAACAACGTGAATATAGTATATTTGAACCAATGGTCACTATCCATTC
TGCTCTAAAAAAAGGTAAACTCAAACAGTGATCATATGAGTAGTTCTAATCTCACCTGCATGCT
CCTTCATGCTAAGGGATTCACCCCTGAATGCTCCAGGATCCTTGTTTGAAGATCTACCACCCAA
ACAAGAGCCATATCATGACAAATCTCATGTGAATCTGAACAGTGTGCATTATCTTATGAAAAAT
ATGTATACAAGAAAGATAGCGAAATGGTATAAATCTCACATGCGGTACAGGACCATAAAGACTC
GACGGCAAAGCTCAAGCTCCCCGACAACTAAGCCAGCAACTGTCCCTTTGGGTGCACGATGAGG
CAAGTCATACCACCGATGCCTGAATTGTAGGTAACTGTCCAGGAACTCATGCAGGGAAGTATTC
TGTGCCA
Conservation Information
Conserved circRNAs osi_circ_014027
PMCS 0.347327706
Functional Information
Coding potential Y
Potential coding position 5488040-5486027(+)
5487920-5485945(-)
Potential amino acid sequence MQGSILCHFLSNISNPVHQLELLFKSLEECLSRMIL*(+)
MVLYRISSNKDPGAFRGESLSMKEHAALLQEKRLLDLPKLLDICAIYGHDNCKLTSSLVENAIN
VQPNILDGINIVLPQFLGIFHTMQERCMKSLQALTSSGPNDSGYTQLQKDFSEVLDFVNDAIVT
LDAFVDAYQPAALLFCTSFETSYGVEELLNTLPRLYDSLLPSLLHGFQVMSSSQSNGETASDII
LSDIVLGIRMLSRRTVSFGWRLLEFCYLNNQLVERDVEACTKMFPAKVEDPMIRGDIIIQTLKD
INREATFSQDHPGKTFLQALEKEFKLMNRIGDIRKKVAQNTSLHEFLDSYLQFRHRWYDLPHRA
PKGTVAGLVVGELELCRRVFMVLYRISSNKDPGAFRGESLSMKEHAALLQEKRLLDLPKLLDIC
AIYGHDNCKLTSSLVENAINVQPNILDGINIVLPQFLGIFHTMQERCMKSLQALTSSGPNDSGY
TQLQKDFSEVLDFVNDAIVTLDAFVDAYQPAALLFCTSFETSYGVEELLNTLPRLYDSLLPSLL
HGFQVMSSSQSNGETASDIILSDIVLGIRMLSRRTVSFGWRLLEFCYLNNQLVERDVEACTKMF
PAKVEDPMIRGDIIIQTLKDINREATFSQDHPGKTFLQALEKEFKLMNRIGDIRKKVAQNTSLH
EFLDSYLQFRHRWYDLPHRAPKGTVAGLVVGELELCRRVFMVLYRISSNKDPGAFRGESLSMKE
HAALLQEKRLLDLPKLLDICAIYGHDNCKLTSSLVENAINVQPNILDGINIVLPQFLGIFHTMQ
ERCMKSLQALTSSGPNDSGYTQLQKDFSEVLDFVNDAIVTLDAFVDAYQPAALLFCTSFETSYG
VEELLNTLPRLYDSLLPSLLHGFQVMSSSQSNGETASDIILSDIVLGIRMLSRRTVSFGWRLLE
FCYLNNQLVERDVEACTKMFPAKVEDPMIRGDIIIQTLKDINREATFSQDHPGKTFLQALEKEF
KLMNRIGDIRKKVAQNTSLHEFLDSYLQFRHRWYDLPHRAPKGTVAGLVVGELELCRRVFMVLY
RISSNKDPGAFRGESLSMKEHAALLQEKRLLDLPKLLDICAIYGHDNCKLTSSLVENAINVQPN
ILDGINIVLPQFLGIFHTMQERCMKSLQALTSSGPNDSGYTQLQKDFSEVLDFVNDAIVTLDAF
VDAYQPAALLFCTSFETSYGVEELLNTLPRLYDSLLPSLLHGFQVMSSSQSNGETASDIILSDI
VLGIRMLSRRTVSFGWRLLEFCYLNNQLVERDVEACTKMFPAKVEDPMIRGDIIIQTLKDINRE
ATFSQDHPGKTFLQALEKEFKLMNRIGDIRKK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017