Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os03g0205000_circ_g.2 |
| ID in PlantcircBase | osa_circ_018421 |
| Alias | Os_ciR9091 |
| Organism | Oryza sativa |
| Position | chr3: 5485943-5488061 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer, KNIFE, circRNA_finder, find_circ |
| Parent gene | Os03g0205000 |
| Parent gene annotation |
Ubiquitin system component Cue domain containing protein. (Os03t 0205000-01) |
| Parent gene strand | - |
| Alternative splicing | Os03g0205000_circ_g.1 Os03g0205000_circ_g.3 |
| Support reads | 2/3 |
| Tissues | root/shoot, root, seed |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os03t0205000-01:7 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | osi_circ_014027 |
| PMCS | 0.347327706 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
5488040-5486027(+) 5487920-5485945(-) |
| Potential amino acid sequence |
MQGSILCHFLSNISNPVHQLELLFKSLEECLSRMIL*(+) MVLYRISSNKDPGAFRGESLSMKEHAALLQEKRLLDLPKLLDICAIYGHDNCKLTSSLVENAIN VQPNILDGINIVLPQFLGIFHTMQERCMKSLQALTSSGPNDSGYTQLQKDFSEVLDFVNDAIVT LDAFVDAYQPAALLFCTSFETSYGVEELLNTLPRLYDSLLPSLLHGFQVMSSSQSNGETASDII LSDIVLGIRMLSRRTVSFGWRLLEFCYLNNQLVERDVEACTKMFPAKVEDPMIRGDIIIQTLKD INREATFSQDHPGKTFLQALEKEFKLMNRIGDIRKKVAQNTSLHEFLDSYLQFRHRWYDLPHRA PKGTVAGLVVGELELCRRVFMVLYRISSNKDPGAFRGESLSMKEHAALLQEKRLLDLPKLLDIC AIYGHDNCKLTSSLVENAINVQPNILDGINIVLPQFLGIFHTMQERCMKSLQALTSSGPNDSGY TQLQKDFSEVLDFVNDAIVTLDAFVDAYQPAALLFCTSFETSYGVEELLNTLPRLYDSLLPSLL HGFQVMSSSQSNGETASDIILSDIVLGIRMLSRRTVSFGWRLLEFCYLNNQLVERDVEACTKMF PAKVEDPMIRGDIIIQTLKDINREATFSQDHPGKTFLQALEKEFKLMNRIGDIRKKVAQNTSLH EFLDSYLQFRHRWYDLPHRAPKGTVAGLVVGELELCRRVFMVLYRISSNKDPGAFRGESLSMKE HAALLQEKRLLDLPKLLDICAIYGHDNCKLTSSLVENAINVQPNILDGINIVLPQFLGIFHTMQ ERCMKSLQALTSSGPNDSGYTQLQKDFSEVLDFVNDAIVTLDAFVDAYQPAALLFCTSFETSYG VEELLNTLPRLYDSLLPSLLHGFQVMSSSQSNGETASDIILSDIVLGIRMLSRRTVSFGWRLLE FCYLNNQLVERDVEACTKMFPAKVEDPMIRGDIIIQTLKDINREATFSQDHPGKTFLQALEKEF KLMNRIGDIRKKVAQNTSLHEFLDSYLQFRHRWYDLPHRAPKGTVAGLVVGELELCRRVFMVLY RISSNKDPGAFRGESLSMKEHAALLQEKRLLDLPKLLDICAIYGHDNCKLTSSLVENAINVQPN ILDGINIVLPQFLGIFHTMQERCMKSLQALTSSGPNDSGYTQLQKDFSEVLDFVNDAIVTLDAF VDAYQPAALLFCTSFETSYGVEELLNTLPRLYDSLLPSLLHGFQVMSSSQSNGETASDIILSDI VLGIRMLSRRTVSFGWRLLEFCYLNNQLVERDVEACTKMFPAKVEDPMIRGDIIIQTLKDINRE ATFSQDHPGKTFLQALEKEFKLMNRIGDIRKK(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ye et al., 2015;Chu et al., 2017 |