Detail information of Os01g0225200_circ_g.1


General Information
CircRNA Name Os01g0225200_circ_g.1
ID in PlantcircBase osa_circ_000907
Alias Os_ciR6576
Organism Oryza sativa
Position chr1: 6899596-6902216  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os01g0225200
Parent gene annotation Similar to predicted protein. (Os01t0225200-01)
Parent gene strand +
Alternative splicing Os01g0225200_circ_g.2 Os01g0225200_circ_g.3
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0225200-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGTAGGGGGCGGATTGCTGTCATGCGCCAGGTTATAGATACTTATGAGAAATGGTGTTTAAGG
TTGTCGACCTCACGGCTGAACCGTTGGTTGCGTAAGatggactcaaccaagatgaccctacctc
tgaggctgagacggaagcccatgaaggtgatgaaagcaagttacctttgcaattggcaattgtt
gggcgtcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1621
Transcript exons: 6899596-6899825,6900122-6901374,6902079-6902216
ATGGACTCAACCAAGATGACCCTACCTCTGAGGCTGAGACGGAAGCCCATGAAGGTGATGAAAG
CAAGTTACCTTTGCAATTGGCAATTGTTGGGCGTCCTAATGTTGGGAAGTCTACCCTGCTGAAT
ACCTTGTTGCAAGAACAAAGAGTTCTGGTTGGCCCCGAGGCAGGCTTAACAAGGGACTCTATTC
GGACTCAGTTTCAGTTTGACAATCGAACTGTATATTTGGTGGACACTGCAGGTTGGATGGAAAG
GTCAGGAAAGGAGAAAGGTCCAGCATCGTTGAGCGTGGTGCAGTCAAGAAAGAATCTGATGAGA
GCTCATATTGTAGCTCTTGTTCTGGATGGAGAAAAGGTACTTAATTTCATCCTGATGTGCTCTG
AGCCAATGACCTGCATATTTCTTACTATGCTTCTTTCTATATGGTTAAGGGATAACATTTTCAA
TGCTCCCCTGTTCTGTAGTTTGTGTCTTTTTTTTTTCATAACGAAGAACTCCAAGTGAATATCT
TTTACTACGGGTTTCTGGTGCCATGTTATTAATGTGGCATATATTCATGCCCCTTTGGAATGTG
GAAAAAAAAAATCCTGATTTGCACTTGAGCAGGGCGTGCTATTCAACATTTCAACCTCTCAAGC
CATGATTTGCTAATGGAGGCATCACTACATGTGTATGACTTTTGTCTGAATATTTGAGGGAATA
AACAATAACTCAATTGATTGTGGTGTTCTTCTTTACCAATTGCATTTGCTAGATCACCTGGGTT
ATCTGCTCTTTAACCTTGATATGCATAAGTTCTATGTCAACTTGCCAAGTACAAAGAGTCAGAC
AGAGGATGAACAACCTCATCAAGCATGTTAACGTTGTTTATGTACTCTGCTAGAAACTAAGTTG
CATTAGTCATGGGGCTGCACTACTAAAGTGCTAGTATTGGATGTGTTGGTGGTTGTAAATCATA
GTTGATGTGCTTTTCACATTTATGGCGAGTGCCACCACCTTTTTATGTAAAATACATGTGAAAT
TTGGTCCAGTGCCAGTAATATTTTGTACAGTCATTTATTTTGTAACAATCGCCTCCTCAATACT
ATTACTTCTTAACCGTAGTTCTGTTTAATGTACTGAATTTAGTTTTTGTAAGCTTGATGTTGTA
ATGTCAGTCCTATTTCAAACTAGTAAGCATCAGAAGCATCATAGTCAATGTTTAAATTGAATAT
ACCAGTCTGATACTTTGCATGTCTATGCATTTGCTGTCATTTGATTTTTAACGGCCAATGCCAT
AACAAATCTTTATTAATTTGTAGATTGCAAAGTCTAAAAGTAGCATGAATCACCCTGAAGTTCT
GATAGCACGGCAAGCAATAGAAGAAGGTCGTGGACTTGTTGTGATTGTCAACAAAATGGATCTT
CTTAGGGAAAACCGACCATTGTTTGACAAAGTGATAGATGCTGTTCCTAAAGAAATCCAGACAG
TTATTCCCCAGGTTACAGGAATACCAGTTGTGTTTATGTCTGCATTGGAGGGTAGGGGGCGGAT
TGCTGTCATGCGCCAGGTTATAGATACTTATGAGAAATGGTGTTTAAGGTTGTCGACCTCACGG
CTGAACCGTTGGTTGCGTAAG

Genomic sequence ATGGACTCAACCAAGATGACCCTACCTCTGAGGCTGAGACGGAAGCCCATGAAGGTGATGAAAG
CAAGTTACCTTTGCAATTGGCAATTGTTGGGCGTCCTAATGTTGGGAAGTCTACCCTGCTGAAT
ACCTTGTTGCAAGAACAAAGAGTTCTGGTTGGCCCCGAGGCAGGCTTAACAAGGGACTCTATTC
GGACTCAGTTTCAGTTTGACAATCGAACTGTATATTTGGTAATTCCTTTTTATGAGTTCAATAT
TATATTTTTCACTTTTATTTCTTGTATTGGCCATATATATATGTGCTTGTGTTGTGAACTTTAG
TGGTCTTACACTATGATGTGTCACACAGCCTTTTTGCGAGAACATAATGATTATTTGTTTAAAA
ATATTATCTAGTTGGAGTGTGTCAAATTCACTCAAAGTTGCGATTGCATGGTGCAATCTAGGAG
CTCATATCATAATGTCCATGCAAGCTACTTATCTGAACGGAGTCATCATTTTCATTTTTCCTTT
TTTTCGTGGTGCAGGTGGACACTGCAGGTTGGATGGAAAGGTCAGGAAAGGAGAAAGGTCCAGC
ATCGTTGAGCGTGGTGCAGTCAAGAAAGAATCTGATGAGAGCTCATATTGTAGCTCTTGTTCTG
GATGGAGAAAAGGTACTTAATTTCATCCTGATGTGCTCTGAGCCAATGACCTGCATATTTCTTA
CTATGCTTCTTTCTATATGGTTAAGGGATAACATTTTCAATGCTCCCCTGTTCTGTAGTTTGTG
TCTTTTTTTTTTCATAACGAAGAACTCCAAGTGAATATCTTTTACTACGGGTTTCTGGTGCCAT
GTTATTAATGTGGCATATATTCATGCCCCTTTGGAATGTGGAAAAAAAAAATCCTGATTTGCAC
TTGAGCAGGGCGTGCTATTCAACATTTCAACCTCTCAAGCCATGATTTGCTAATGGAGGCATCA
CTACATGTGTATGACTTTTGTCTGAATATTTGAGGGAATAAACAATAACTCAATTGATTGTGGT
GTTCTTCTTTACCAATTGCATTTGCTAGATCACCTGGGTTATCTGCTCTTTAACCTTGATATGC
ATAAGTTCTATGTCAACTTGCCAAGTACAAAGAGTCAGACAGAGGATGAACAACCTCATCAAGC
ATGTTAACGTTGTTTATGTACTCTGCTAGAAACTAAGTTGCATTAGTCATGGGGCTGCACTACT
AAAGTGCTAGTATTGGATGTGTTGGTGGTTGTAAATCATAGTTGATGTGCTTTTCACATTTATG
GCGAGTGCCACCACCTTTTTATGTAAAATACATGTGAAATTTGGTCCAGTGCCAGTAATATTTT
GTACAGTCATTTATTTTGTAACAATCGCCTCCTCAATACTATTACTTCTTAACCGTAGTTCTGT
TTAATGTACTGAATTTAGTTTTTGTAAGCTTGATGTTGTAATGTCAGTCCTATTTCAAACTAGT
AAGCATCAGAAGCATCATAGTCAATGTTTAAATTGAATATACCAGTCTGATACTTTGCATGTCT
ATGCATTTGCTGTCATTTGATTTTTAACGGCCAATGCCATAACAAATCTTTATTAATTTGTAGA
TTGCAAAGTCTAAAAGTAGCATGAATCACCCTGAAGTTCTGATAGCACGGCAAGCAATAGAAGA
AGGTCGTGGACTTGTTGTGATTGTCAACAAAATGGATCTTCTTAGGGAAAACCGACCATTGTTT
GACAAAGTGATAGATGCTGTTCCTAAAGAAATCCAGACAGTTATTCCCCAGGTTTGCTTTCTTG
TTGTACTAACCTACAACCTTGACCTATATACTGCTAACATGATTGCACAGACACTGGAAACTTT
TGTGTAATTTCTGCTAAGTATTATCTAATTATCTTGGAGACTTTCATTTCCAATTGATTCTGGG
AAAGCTTTCTGATTATTTGTTCTTTAGTTGAAACCTTGCCAAGTTTATAATCAGTTTTTTCAGC
AACAAGCTTGATGTTTTATTATCAGTTTAGTGCTTTCTGAGTATTACTCATGTAGATGCTTTAC
TTTGTTTGCCGATGGAGTACGAGAAATGGAAGATTGAAGTTTCTTTGTTTTGGTTGTTATTGCA
CATGGAGATGTCTTGCTCTGTCTACTGACGGAATGTAGATATTGAGATTCATTTTGATGGATCT
TCCATGTTCTTGATTGACAAACCATGATTTCTTTAGTGTCTGCTAATGGCTGGAAATGTGCAAT
CTAATCTCTGGCTTATTTTTTTGACCTTTCCAGAGCACGTTGCATATCTATTAATGATTTAGTG
TAGTAATATCATTATGAAATATGAAGTGTTGCTTTTCCAGTGCATTTCGTATAACTTTTGATTC
ACTAAAAAGGGAGAATTACAGTGAACCATTTTACCAGAATATATCAGTAGTTTGCTTCATATTT
TGACAGGGGACCACGTGACAAAATATACTAATCTTCTCCTATTTCTGGCAGGTTACAGGAATAC
CAGTTGTGTTTATGTCTGCATTGGAGGGTAGGGGGCGGATTGCTGTCATGCGCCAGGTTATAGA
TACTTATGAGAAATGGTGTTTAAGGTTGTCGACCTCACGGCTGAACCGTTGGTTGCGTAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.215620943
Functional Information
Coding potential Y
Potential coding position 6901217-6899718(+)
6899647-6902161(-)
Potential amino acid sequence MNHPEVLIARQAIEEGRGLVVIVNKMDLLRENRPLFDKVIDAVPKEIQTVIPQVTGIPVVFMSA
LEGRGRIAVMRQVIDTYEKWCLRLSTSRLNRWLRKMDSTKMTLPLRLRRKPMKVMKASYLCNWQ
LLGVLMLGSLPC*(+)
MGFRLSLRGRVILVESILRNQRFSREVDNLKHHFS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015