Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d049223_circ_g.2 |
| ID in PlantcircBase | zma_circ_007985 |
| Alias | zma_circ_0001681 |
| Organism | Zea mays |
| Position | chr4: 21443180-21445722 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | e-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d049223 |
| Parent gene annotation |
Zinc finger CCCH domain-containing protein 33 |
| Parent gene strand | + |
| Alternative splicing | Zm00001d049223_circ_g.1 |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d049223_T001:4 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.144887274 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
21443199-21445719(+) 21445642-21443232(+) 21444038-21445710(-) 21444309-21445678(-) |
| Potential amino acid sequence |
MKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAMATRVQLNELGYPLRPNEKECAYYL RTGQCKFGSTCKFHHSQPSTMMVAVRGSVYSPGQSATSPGQHAYQGAVTSWPLSRSASFIASPR WPGHSSYAQVIVPPGLVQVPGWSPYTAQIGSSSSEDQQRTPGAAQYYTGSRQSGTSIGDQGMFS SYQAGSVPVGLYAVQRENLFPERPDQPECQFYMKTGDCKFGAVCKFHHPRERIIPTPNCALSPL GLPLRPAVAAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAMATRVQLNELGYP LRPNEKECAYYLRTGQCKFGSTCKFHHSQPSTMMVAVRGSVYSPGQSATSPGQHAYQGAVTSWP LSRSASFIASPRWPGHSSYAQVIVPPGLVQVPGWSPYTAQIGSSSSEDQQRTPGAAQYYTGSRQ SGTSIGDQGMFSSYQAGSVPVGLYAVQRENLFPERPDQPECQFYMKTGDCKFGAVCKFHHPRER IIPTPNCALSPLGLPLRPAVAAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAM ATRVQLNELGYPLRPNEKECAYYLRTGQCKFGSTCKFHHSQPSTMMVAVRGSVYSPGQSATSPG QHAYQGAVTSWPLSRSASFIASPRWPGHSSYAQVIVPPGLVQVPGWSPYTAQIGSSSSEDQQRT PGAAQYYTGSRQSGTSIGDQGMFSSYQAGSVPVGLYAVQRENLFPERPDQPECQFYMKTGDCKF GAVCKFHHPRERIIPTPNCALSPLGLPLRPAVAAARMKGEYPQRIGQPECQYYLKTGTCKFGAT CKFHHPREKAAMATRVQLNELGYPLRPNEKECAYYLRTGQCKFGSTCKFHHSQPSTMMVAVRGS VYSPGQSATSPGQHAYQGAVTSWPLSRSASFIASPRWPGHSSYAQVIVPPGLVQVPGWSPYTAQ IGSSSSEDQQRTPGAAQYYTGSRQSGTSIGDQGMFSSYQAGSVPVGLYAVQRENLFPERPDQPE CQFYMKTGDCKFGAVCKFHHPRERIIPTPNCALSPLGLPLRP(+) MQVPSSQGANNSYSQLCTESIRPTFAPGCCCCKNEGRISSKNWAA*(+) MMKLASCSKLARASLQIVLTFRLPNSLRIFSLHSCSSNSRAQR*(-) MVVNGETYMCFQTCTALFLNNKHTLFHSGGVGSPVHSTELELPLQPFLGDDETCKLLQTCTCQS SDSIDIQAAQFFEDILPSFLQQQQPGAKVGLMDSVHNWE*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |