Detail information of Zm00001d049223_circ_g.2


General Information
CircRNA Name Zm00001d049223_circ_g.2
ID in PlantcircBase zma_circ_007985
Alias zma_circ_0001681
Organism Zea mays
Position chr4: 21443180-21445722  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d049223
Parent gene annotation Zinc finger CCCH domain-containing protein 33
Parent gene strand +
Alternative splicing Zm00001d049223_circ_g.1
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d049223_T001:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGTAAGTTTGGTGCTGTATGCAAGTTCCATCATCCCAGGGAGCGAATAATTCCTACTCCCAAT
TGTGCACTGAGTCCATTAGGCCTACCTTTGCGCCCGgctgttgctgctgcaagaatgaagggag
aatatcctcaaagaattgggcagcctgaatgtcaagtgagattcctctcttctcgtttttctca
tctgtttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 804
Transcript exons: 21443180-21443242,21443983-21444102,21444226-21444522,21
445399-21445722
GCTGTTGCTGCTGCAAGAATGAAGGGAGAATATCCTCAAAGAATTGGGCAGCCTGAATGTCAAT
ACTATCTGAAGACTGGCACGTGCAAGTTTGGAGCAACTTGCAAGTTTCATCATCCCCGAGAAAA
GGCTGCAATGGCAACTCGAGTTCAGTTGAATGAACTGGGCTACCCACTCCGCCCGAATGAAAAA
GAGTGTGCTTATTATTTAAGAACAGGGCAGTGCAAGTTTGGAAGCACATGTAAGTTTCACCATT
CACAACCATCCACCATGATGGTTGCTGTACGTGGCTCTGTTTATTCACCTGGACAGTCTGCAAC
TTCTCCTGGCCAGCATGCTTACCAAGGGGCTGTAACAAGCTGGCCCTTGTCGAGATCTGCTTCT
TTCATTGCAAGTCCAAGGTGGCCAGGTCATTCAAGTTATGCACAAGTGATTGTTCCTCCCGGGC
TTGTTCAGGTCCCAGGGTGGAGTCCTTATACTGCGCAAATTGGTTCTTCATCCTCGGAGGACCA
ACAACGGACACCTGGAGCTGCTCAATACTATACTGGCTCACGCCAAAGTGGTACTAGTATAGGC
GATCAAGGAATGTTTTCATCCTACCAAGCAGGTTCTGTTCCTGTTGGACTTTATGCAGTACAGA
GGGAGAATTTATTTCCAGAGAGACCTGACCAACCTGAATGTCAGTTCTATATGAAGACCGGAGA
CTGTAAGTTTGGTGCTGTATGCAAGTTCCATCATCCCAGGGAGCGAATAATTCCTACTCCCAAT
TGTGCACTGAGTCCATTAGGCCTACCTTTGCGCCCG

Genomic sequence GCTGTTGCTGCTGCAAGAATGAAGGGAGAATATCCTCAAAGAATTGGGCAGCCTGAATGTCAAG
TGAGATTCCTCTCTTCTCGTTTTTCTCATCTGTTTCTTTCGACAATGCAAAATATGATTGTTGA
TTTATATCCACTTGTGCCTCAATGCTCATGAGGTCCTGCCATGAGTTGCTACTTGTCTACTTGA
GATGTCTAGTTTAGGACTTTAGATCACTATTCTTGTTTTAAAGACGTTTAACTGTCATTGCCTT
CTTGTGCTTCAAGTGTAGTGCAGCTGCATATTGGTAGGTCTTTGCTGAAGTTTTTAGTCAAATG
AATATATATAACACTAATAATACAGTATATGGTCCTAGAGTATGTGTTGTTATAGTTGAGCTTG
ATATATGTTATTATTAATTAATTTCATGCTGTTTCTTGGGGTGGCATAAATGGTGTTTGTTGTG
CTTTTCAATGCATTTATCTTTCCTTTTTGGTCCATGCAGGAGTACAGTTAGAATCTTTTAAATG
AGGTCACATAACATTCTCTTGATTGAAATTCCGACTCATATTGTTAGCTGTACATGGTTCTACA
GTGAGTTTGCATTTTAATCCAAGTGTTAGTTGATTTAGGTTAATAAAATTCAACTGTGCATGCC
TATGTTACAACTATATTTTGCTTGTCTGAATGACCTGAACTTTTGTAATTAAGTTGCTCATACA
TTTTGTCCTTTTCTATGTGAGCATATAATTTCTTTTGGAAAGTGTTTGGTTACATTATTGGTGA
ATTTGCATTTTTATTGTTTTCATACCCCCTTTTAGTACTATCTGAAGACTGGCACGTGCAAGTT
TGGAGCAACTTGCAAGTTTCATCATCCCCGAGAAAAGGCTGCAATGGCAACTCGAGTTCAGTTG
AATGAACTGGGCTACCCACTCCGCCCGGTTTGTTCTGAATTTCTATTACAATTCACAATGTTTC
ATGATATGAATGCATACTATTGTGCCGCCTTTCTATGCAACATTTTTGCAAGATTTGTGTTGTT
TACTTGAATTTTATTACTGCAGAATGAAAAAGAGTGTGCTTATTATTTAAGAACAGGGCAGTGC
AAGTTTGGAAGCACATGTAAGTTTCACCATTCACAACCATCCACCATGATGGTTGCTGTACGTG
GCTCTGTTTATTCACCTGGACAGTCTGCAACTTCTCCTGGCCAGCATGCTTACCAAGGGGCTGT
AACAAGCTGGCCCTTGTCGAGATCTGCTTCTTTCATTGCAAGTCCAAGGTGGCCAGGTCATTCA
AGTTATGCACAAGTGATTGTTCCTCCCGGGCTTGTTCAGGTCCCAGGGTGGAGTCCTTATACTG
TATGTTCTCTGATCTCTGTTTTACTTTTTACGTAGCCTAACAAGTTCATATTTCATCACCTTAT
TACATGGCACTTACGATCTGGTTATCAAGAATGTTGTGAAAGATCACAACCTTGTTTGTAGTAA
AACAAAAAAATTTCGATTACATGTTACTTATACTGAGCCGATCTTAACAAGGCATAAGTCTGAC
CGGTGCCAGTCCCTCTATCGCTCAATTGACCCCAAGACCTTTGGCTAGGTCAATGGTGAGTGAG
GATCTGCTAAATGCTGGCTACAGATTTTTTGTCCCTCAAGTGGTTTGATGTTGTCTTAATATTA
GTGATAAAAGTTTGCCCATTTGGACACTAGAATGAGGCATAAAAATGTTACCATGATGTGCAGA
GTCAAATTTAACCATGATTTTAAAACTGTAAATAATTAGTCATGTGCTTATGTTATTCTCTGCC
TTTGATGATATGAGTTTAGGTATCCAGGGTTGACTAGTTGAGAGAGCACCTGTATTAGGTGTCA
TTACTGTGATGTTTCATTTCTCAAACACAAATCACATCTTAATCTAGAAATATTCCATGTTGAA
AAACTAATCCAGAGGGATTCCTAGTTCATCGTATATACCTCAATTCTGTAATGCCTTTTCATGG
CTATTTTTTAAAAAACCTAGCATCTTGATAAGGATTGTTGTCTTTTTCATGTGAAATTTTAGTT
TACTTTCTTCCTCATGCTCATGCTGGTCTTTCTGCCTAGTGTATGAGCTCAGAGCTTGTACTTG
GAATATGAATTATCTATAAGTCTTCTTAAAAGTTACTGCCGCTCTTGAACCATTTTTTAGTTTC
CATGTAATTTATGAATCATTATTATTTTTTTCCAAATTTGTAGGCGCAAATTGGTTCTTCATCC
TCGGAGGACCAACAACGGACACCTGGAGCTGCTCAATACTATACTGGCTCACGCCAAAGTGGTA
CTAGTATAGGCGATCAAGGAATGTTTTCATCCTACCAAGCAGGTTCTGTTCCTGTTGGACTTTA
TGCAGTACAGAGGGAGAATTTATTTCCAGAGAGACCTGACCAACCTGAATGTCAGTTCTATATG
AAGACCGGAGACTGTAAGTTTGGTGCTGTATGCAAGTTCCATCATCCCAGGGAGCGAATAATTC
CTACTCCCAATTGTGCACTGAGTCCATTAGGCCTACCTTTGCGCCCG
Conservation Information
Conserved circRNAs NA
PMCS 0.144887274
Functional Information
Coding potential Y
Potential coding position 21443199-21445719(+)
21445642-21443232(+)
21444038-21445710(-)
21444309-21445678(-)
Potential amino acid sequence MKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAMATRVQLNELGYPLRPNEKECAYYL
RTGQCKFGSTCKFHHSQPSTMMVAVRGSVYSPGQSATSPGQHAYQGAVTSWPLSRSASFIASPR
WPGHSSYAQVIVPPGLVQVPGWSPYTAQIGSSSSEDQQRTPGAAQYYTGSRQSGTSIGDQGMFS
SYQAGSVPVGLYAVQRENLFPERPDQPECQFYMKTGDCKFGAVCKFHHPRERIIPTPNCALSPL
GLPLRPAVAAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAMATRVQLNELGYP
LRPNEKECAYYLRTGQCKFGSTCKFHHSQPSTMMVAVRGSVYSPGQSATSPGQHAYQGAVTSWP
LSRSASFIASPRWPGHSSYAQVIVPPGLVQVPGWSPYTAQIGSSSSEDQQRTPGAAQYYTGSRQ
SGTSIGDQGMFSSYQAGSVPVGLYAVQRENLFPERPDQPECQFYMKTGDCKFGAVCKFHHPRER
IIPTPNCALSPLGLPLRPAVAAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAM
ATRVQLNELGYPLRPNEKECAYYLRTGQCKFGSTCKFHHSQPSTMMVAVRGSVYSPGQSATSPG
QHAYQGAVTSWPLSRSASFIASPRWPGHSSYAQVIVPPGLVQVPGWSPYTAQIGSSSSEDQQRT
PGAAQYYTGSRQSGTSIGDQGMFSSYQAGSVPVGLYAVQRENLFPERPDQPECQFYMKTGDCKF
GAVCKFHHPRERIIPTPNCALSPLGLPLRPAVAAARMKGEYPQRIGQPECQYYLKTGTCKFGAT
CKFHHPREKAAMATRVQLNELGYPLRPNEKECAYYLRTGQCKFGSTCKFHHSQPSTMMVAVRGS
VYSPGQSATSPGQHAYQGAVTSWPLSRSASFIASPRWPGHSSYAQVIVPPGLVQVPGWSPYTAQ
IGSSSSEDQQRTPGAAQYYTGSRQSGTSIGDQGMFSSYQAGSVPVGLYAVQRENLFPERPDQPE
CQFYMKTGDCKFGAVCKFHHPRERIIPTPNCALSPLGLPLRP(+)
MQVPSSQGANNSYSQLCTESIRPTFAPGCCCCKNEGRISSKNWAA*(+)
MMKLASCSKLARASLQIVLTFRLPNSLRIFSLHSCSSNSRAQR*(-)
MVVNGETYMCFQTCTALFLNNKHTLFHSGGVGSPVHSTELELPLQPFLGDDETCKLLQTCTCQS
SDSIDIQAAQFFEDILPSFLQQQQPGAKVGLMDSVHNWE*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b