Detail information of Zm00001d049223_circ_g.1


General Information
CircRNA Name Zm00001d049223_circ_g.1
ID in PlantcircBase zma_circ_001633
Alias circ2224
Organism Zea mays
Position chr4: 21443179-21445722  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d049223
Parent gene annotation Zinc finger CCCH domain-containing protein 33
Parent gene strand +
Alternative splicing Zm00001d049223_circ_g.2
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered Zm00001d049223_T001:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGTAAGTTTGGTGCTGTATGCAAGTTCCATCATCCCAGGGAGCGAATAATTCCTACTCCCAAT
TGTGCACTGAGTCCATTAGGCCTACCTTTGCGCCCGggctgttgctgctgcaagaatgaaggga
gaatatcctcaaagaattgggcagcctgaatgtcaagtgagattcctctcttctcgtttttctc
atctgttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCTGTTGCTGCTGCAAGAATGAAGGGAGAATATCCTCAAAGAATTGGGCAGCCTGAATGTCAA
GTGAGATTCCTCTCTTCTCGTTTTTCTCATCTGTTTCTTTCGACAATGCAAAATATGATTGTTG
ATTTATATCCACTTGTGCCTCAATGCTCATGAGGTCCTGCCATGAGTTGCTACTTGTCTACTTG
AGATGTCTAGTTTAGGACTTTAGATCACTATTCTTGTTTTAAAGACGTTTAACTGTCATTGCCT
TCTTGTGCTTCAAGTGTAGTGCAGCTGCATATTGGTAGGTCTTTGCTGAAGTTTTTAGTCAAAT
GAATATATATAACACTAATAATACAGTATATGGTCCTAGAGTATGTGTTGTTATAGTTGAGCTT
GATATATGTTATTATTAATTAATTTCATGCTGTTTCTTGGGGTGGCATAAATGGTGTTTGTTGT
GCTTTTCAATGCATTTATCTTTCCTTTTTGGTCCATGCAGGAGTACAGTTAGAATCTTTTAAAT
GAGGTCACATAACATTCTCTTGATTGAAATTCCGACTCATATTGTTAGCTGTACATGGTTCTAC
AGTGAGTTTGCATTTTAATCCAAGTGTTAGTTGATTTAGGTTAATAAAATTCAACTGTGCATGC
CTATGTTACAACTATATTTTGCTTGTCTGAATGACCTGAACTTTTGTAATTAAGTTGCTCATAC
ATTTTGTCCTTTTCTATGTGAGCATATAATTTCTTTTGGAAAGTGTTTGGTTACATTATTGGTG
AATTTGCATTTTTATTGTTTTCATACCCCCTTTTAGTACTATCTGAAGACTGGCACGTGCAAGT
TTGGAGCAACTTGCAAGTTTCATCATCCCCGAGAAAAGGCTGCAATGGCAACTCGAGTTCAGTT
GAATGAACTGGGCTACCCACTCCGCCCGGTTTGTTCTGAATTTCTATTACAATTCACAATGTTT
CATGATATGAATGCATACTATTGTGCCGCCTTTCTATGCAACATTTTTGCAAGATTTGTGTTGT
TTACTTGAATTTTATTACTGCAGAATGAAAAAGAGTGTGCTTATTATTTAAGAACAGGGCAGTG
CAAGTTTGGAAGCACATGTAAGTTTCACCATTCACAACCATCCACCATGATGGTTGCTGTACGT
GGCTCTGTTTATTCACCTGGACAGTCTGCAACTTCTCCTGGCCAGCATGCTTACCAAGGGGCTG
TAACAAGCTGGCCCTTGTCGAGATCTGCTTCTTTCATTGCAAGTCCAAGGTGGCCAGGTCATTC
AAGTTATGCACAAGTGATTGTTCCTCCCGGGCTTGTTCAGGTCCCAGGGTGGAGTCCTTATACT
GTATGTTCTCTGATCTCTGTTTTACTTTTTACGTAGCCTAACAAGTTCATATTTCATCACCTTA
TTACATGGCACTTACGATCTGGTTATCAAGAATGTTGTGAAAGATCACAACCTTGTTTGTAGTA
AAACAAAAAAATTTCGATTACATGTTACTTATACTGAGCCGATCTTAACAAGGCATAAGTCTGA
CCGGTGCCAGTCCCTCTATCGCTCAATTGACCCCAAGACCTTTGGCTAGGTCAATGGTGAGTGA
GGATCTGCTAAATGCTGGCTACAGATTTTTTGTCCCTCAAGTGGTTTGATGTTGTCTTAATATT
AGTGATAAAAGTTTGCCCATTTGGACACTAGAATGAGGCATAAAAATGTTACCATGATGTGCAG
AGTCAAATTTAACCATGATTTTAAAACTGTAAATAATTAGTCATGTGCTTATGTTATTCTCTGC
CTTTGATGATATGAGTTTAGGTATCCAGGGTTGACTAGTTGAGAGAGCACCTGTATTAGGTGTC
ATTACTGTGATGTTTCATTTCTCAAACACAAATCACATCTTAATCTAGAAATATTCCATGTTGA
AAAACTAATCCAGAGGGATTCCTAGTTCATCGTATATACCTCAATTCTGTAATGCCTTTTCATG
GCTATTTTTTAAAAAACCTAGCATCTTGATAAGGATTGTTGTCTTTTTCATGTGAAATTTTAGT
TTACTTTCTTCCTCATGCTCATGCTGGTCTTTCTGCCTAGTGTATGAGCTCAGAGCTTGTACTT
GGAATATGAATTATCTATAAGTCTTCTTAAAAGTTACTGCCGCTCTTGAACCATTTTTTAGTTT
CCATGTAATTTATGAATCATTATTATTTTTTTCCAAATTTGTAGGCGCAAATTGGTTCTTCATC
CTCGGAGGACCAACAACGGACACCTGGAGCTGCTCAATACTATACTGGCTCACGCCAAAGTGGT
ACTAGTATAGGCGATCAAGGAATGTTTTCATCCTACCAAGCAGGTTCTGTTCCTGTTGGACTTT
ATGCAGTACAGAGGGAGAATTTATTTCCAGAGAGACCTGACCAACCTGAATGTCAGTTCTATAT
GAAGACCGGAGACTGTAAGTTTGGTGCTGTATGCAAGTTCCATCATCCCAGGGAGCGAATAATT
CCTACTCCCAATTGTGCACTGAGTCCATTAGGCCTACCTTTGCGCCCG
Conservation Information
Conserved circRNAs NA
PMCS 0.040323372
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b