Detail information of BGIOSGA016540_circ_g.2


General Information
CircRNA Name BGIOSGA016540_circ_g.2
ID in PlantcircBase osi_circ_005527
Alias 4:21125783|21127302
Organism Oryza sativa ssp. indica
Position chr4: 21125783-21127302  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016540
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016540_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA016540-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATTTCTTCAATGTCGCAGGAACATCTGCTGGTGTTGGTTTTGCCATCCCGTCATCAACTGTT
CTGAAAATAGCTCCTCAGTTAATTCAGTTTGGAAAAgtggatgctcctacagatctgttgaagc
caattaacgtgggacaatcttcagctctaagagttggtcaacagtgtttagcaattggaaatcc
atttggct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGATGCTCCTACAGATCTGTTGAAGCCAATTAACGTGGGACAATCTTCAGCTCTAAGAGTTG
GTCAACAGTGTTTAGCAATTGGAAATCCATTTGGCTTTGACCATGCTCTAACTGTTGGTGTCAT
CAGTGGTTTAAATCGAGACATTTTCAGTCAAGCTGGAGTAACAATTGGAGGTGGAATTCAAACA
GATGCAGCTATTAACCCTGGGAACAGGTTTGTAGATATGTTTCTTTAATGATTTATCAACTGAT
TACCCTTTTCTGGTCTCAGAACCCAACCTGGAAACTACCATTAGTTGTACTGGTTTACATCTGT
ATATTACTTACTGACAAGCATAAACACTTTTGTCACTAGTTACTTGATGGCTATACTGTATTAC
TGTTTATGGTTTCTACTATGCACAAAATGATAGTACTTGCCTATAACAGTGCAAAACAGTTGAC
TCAGGACACAGAAGAGGAAGTATTTTACTTCTTACTTTCTTGAGTTTCTAGCATCGCATCTAAA
GTCAGGACACATAGATTGGGGCTAAATTGCAGCTCTGGCAGTTGGCATAGTGGTAATATTTGTT
GCTACCAGTTTACTATATTAGGGTAGAATTTGATCATATTTGTGGTCAAAATCAGCTTGACCAT
GTATGCCCTCGTCCTTGAAGTGATTTAGTATGCATTACCTGTACTCTGGGGCAATGAACATCTA
GGGTTAAGGATCATGTTGTAAGTAGTGGTTTATACAATATGTGTTGGATATTTATGTTTCTGAA
AATGTATTATAGAGGGTTTTACTAAGCATGTATACTGATGTATGTCCATGCAGTGGTGGTCCAT
TGCTGGATTCGAAGGGGCATATGATTGGTATTAATACAGCAATTTTCACACAGACAGGTTAGAT
TATCTCAACATGAAATGTATTAATCAAATAGCACTGAATTGTTTCATGCTGATTTGCGGAGGTA
ACATTAGTAGATGTTCATGCTTTCTCTACAGATGTCAAGCACTGCACTTAGCATTCAAAAGAGA
ATATGTCCAATTAGTAAAAGTTCATCCTCAATAAACTAAAATGATCATAACACATTGCAAAGCT
TGCCTCGATCCCTGTACATCAGTTCATTTCCCAGAGTACTCTGGTTGATGGCACACTTTGAGTG
ACTTTCTATTTTGATGGCATGATTAGTGAGTGGTATCATCTATCATGTTTATATTCGGATTCAC
AGCATTCTTTGAAATTGTTATTTGCTTGCATCCTAATGGGCTGTAAGAATTGACATAATTGATT
ATAGTTGACTCAAAATCACCTCCTTGAAGCTGTGCATTAGACCATTTGTTTTTGTTGTTGATTT
GGTAGAGCATAAATCAGATATTCAGATCCAACTATGTCCAATGTAACTTAAATTCCTATGTTAG
TCTGAGATTCCATTATTTCTTCAATGTCGCAGGAACATCTGCTGGTGTTGGTTTTGCCATCCCG
TCATCAACTGTTCTGAAAATAGCTCCTCAGTTAATTCAGTTTGGAAAA
Conservation Information
Conserved circRNAs osa_circ_024076*
PMCS
Functional Information
Coding potential Y
Potential coding position 21126636-21127299(+)
Potential amino acid sequence MIGINTAIFTQTGTSAGVGFAIPSSTVLKIAPQLIQFGKVDAPTDLLKPINVGQSSALRVGQQC
LAIGNPFGFDHALTVGVISGLNRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGHMIGINT
AIFTQTGTSAGVGFAIPSSTVLKIAPQLIQFGKVDAPTDLLKPINVGQSSALRVGQQCLAIGNP
FGFDHALTVGVISGLNRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGHMIGINTAIFTQT
GTSAGVGFAIPSSTVLKIAPQLIQFGKVDAPTDLLKPINVGQSSALRVGQQCLAIGNPFGFDHA
LTVGVISGLNRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGHMIGINTAIFTQTGTSAGV
GFAIPSSTVLKIAPQLIQFGK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description leaf senescence
Other Information
References Huang et al., 2021