Detail information of BGIOSGA035260_circ_ig.1


General Information
CircRNA Name BGIOSGA035260_circ_ig.1
ID in PlantcircBase osi_circ_003146
Alias 11:13334537|13337754
Organism Oryza sativa ssp. indica
Position chr11: 13334537-13337754  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA034001_circ_igg.1 BGIOSGA034001_circ_igg.2 BGIOSGA034001_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAATTTATTCCAGATTTGGTCACACCAACGATGACTGCTGCCTCCGTAGTCCTGGCAAAAAAA
TCAAGTAAGCTAACAGTTGTCATCGAAATCCCATAGgatcagatggagtcatcgattacccttg
cgcggttttgaagcgttcggccaaagatgcatcctgtgatatcagtgtttggtaccaactttta
taactatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATCAGATGGAGTCATCGATTACCCTTGCGCGGTTTTGAAGCGTTCGGCCAAAGATGCATCCTG
TGATATCAGTGTTTGGTACCAACTTTTATAACTATCATGTACTAATTCAACATTCTTCAGTCCT
GGAGCACTTTCCCCATGGATTGGGAACCCTTTCAGTGAGTTGCAACCCCCCATTTTGAGACTTA
CTAGTGATTTCCAGGTGAATCTCATGATTTCATCCCTGACCTTGTAGAAGTACTCCATTTCAGG
TAAATCCACAAGAGAGAGATGAGTTAGACTAGGAAATGCTTCTGGATCCAACGAGGCGCCAACA
TCTGCAGGATGTGCCGGATATCTGGTATCAGCACTGACAATTTCACTTCCAACAGTTTCTTCCA
TTTCAACATGTTTGGCAACAATCTCCTCCATCCTGTAATCATTGGCCACGATCTCCTTCAGAGC
CACGTTGCTTTTCAGTGTCAACCTCTCAAGTTTTCTAAGCATAGCAGCTACTCTTGCAACAAAG
ATAAAGTCAAGTTTTCTGCAGCGCTGAACATTGAGTTCCTTTAGGTTTGGACAGATATGCTGTG
GTGGTGGATTTCCTTCCCAATTCCAAATGCTGACAGTTTCTTGCAAGTTGATTAAACGGATTAT
CTTCAAGCAAGGAAATGCAGACAAGTTCTTACTTGTGCTCTGGAAGTGGAACACAGACCTCAAG
CTATCGCACTTTGTTATGTGTAATTCTTCTAGGTTGTGAAATACAGATTGTTTCTGGTCGTCAC
ACCAGACAAGGTGTGTCAGGCCATTGCAATTGGTGAGTCGCAGAATCTTCAGAACACTAAATGT
ACTGATGCAGCTTAGTGCAGTGAAATGCAGCATTGTTGATTCTTCCTCAAAGCAGCTGTCAAGA
ATTAAGTTTTCTGTTTCGCCTAGCAATGCATCTACCACCCAGTCTCCTATGGAGGTAACTCCCT
TAAGATATAGATTCTTGCGGTGTGACTTGACCAGAGTAATCCATTGCAACTCGGTGTAAATGAT
ATAGGACTTCAACTTCCTCACAAAATCAATCCTGAAGATCTGATCATTTAGAGAGAGAACACTG
ACATCTTTGATAAACAACTGCAAGCATCGGAGCCGTGGTAAGCTACCAATCTCAATCATGAGAT
ATGCAGTTACCTTTGAACTGCCAATGTAGAGTTCTTCCAAGTAACGTAGCTTAGAAATTAGTCC
CACTGGTATCTCGGGGGATTGCTTGGATGATAAATCCAATAGCCTAAGCTTCTTTAGATTTCCC
AATTGTTCTGGAAACGAATCAATTGAAAAACCAGTCAGACTAAGTACTCGCAAGTTTTCCAGTC
TGTTGAGTAACCAAAGGCCTCCAGATACCCTTGAATTATTCAGACAGAGTGTCTTAAGCTCTGT
TAGGTCTTTGGTAGAGGAAGGCAGAGAATGGATGAAAGAATTGCTCATATCTAAAACAGCTAAC
TGCTGCATGCTTTCGAAGAAGTTTTGTGGGAGTTCATGTAGATCTGAGTTATTCTGAATCACTA
ACAACTGCAGCTGCGAACTTTGTGGTGCAGTTAGTTTCTCGATGTTGGTATTTATCAATGATAT
TCTCTTGCACTTGTGAAGTCGCTCATTTATTTTTTCTTCGTCAATTTCATGTGGTGCTGCAAAT
TGTTCATCTTGTCTAGAGGCAATGATGACTGCCACATCTCTCACTACATCGTGCATTGTCACAC
ATTCGTTGCCATTAGCAGGCAGCAGTAGAAATGAGTGTATTGTATCTGTCACCATCATGTGTAT
TTGTCCCCTTGATTGGTCCAAAGTAGGAGATTTTTTGAAAATGTCCTCTCCTATCCAGTATCTT
GATAACTCATCTTTGCTTATTTTGTGCCCACCAGGAAACAAGCTACACATCAAGAACAAAGATT
TTGTCCCAGGCCCTTCAAGATGGTCATAACTAAATTCTAAAGGATTATATATCTTCTGGAGCAC
TTCATTTTTCTCAAGACGATTGGAACTCTCAAGCTGTGACAAAATACTCTCCCAGTACATCTTG
TCCTTACCATGCAGGACTGTCCCAATCACATCAAGTGCGACAGGTAAGCGGTCACATTTTTTCG
CTATTTTTTGTTCCACAGACTCTGTTCCATATGTCTCTGATAGTCCTGCTTTGAACTTGAAAAG
TTCCCATGATTCTTGCTCAGTTAAGAAGTCCACAGTAATCTCAACACTTGCGTATGGGTTCTTG
CAAACTCCTTTTTTTTGTGTAGTGACAATTACTTTGCATTGCTCGAGTGGTATGCCCAACATCC
CGAGGTCCACGCTTTCCCAGGCGTTATCCAAGAACACAACATATCTTTTTTCCTTGAGTGTTTT
TGCCAGAAAATCTGTTGCAATTCCCAGTTGCTTGCTGATACTGTTTCTAATCTCCTCCAGTCCT
GGCCTATTGCCAAGGTCCACTGTTAGGACTTCATCAAATGCCGTTTCTTCTCCCATCATCAACT
CCAGAATTTCTGCCACCAAAAGACTTTTACCTATGCCACTAGGTCCGTAAACACCTACCACGTG
CACGTTATCTTCCTTGAGTGCGCTCATGATCTGGCTCGCAGCTTCATTTCTAGATCTGAATTTC
ATCGCATTATTTCGAGCTGGTATAGCGTTTGGTGTTCTTATGCAAGGCACGTGTTCAACAAGAT
CATTCCTGCGCTTGAGCAGTTCTTCAGTTTGATCTAGGAGTTTTTTGGCTAATGCACCAATCTG
CATCCGTCGAAACGGGTTCTTGACCCTTCTTTTCTTTTTAGCTTGACTTTCCAACATCGTTCCA
TTTTGTGTGCCGTCCGTACCATCCTGAACATGTGCTGATGGGTTTTCACCCCTGCATTCCACAA
CCAAATCGTTAACCTGTTTTGATATTCCTTCAACAGCTGATATCCATTTCTTTGCTTCTTCAGA
TGCTGTTTTGTGTTCAGAACGTGCTCCTTCAATCATAGTTTCAATGTCTGTCTTCTTCGGAAGC
AGTAAGTCGTCCACCTTCTTCTTGACCTTTTCGACTTCTGCCTTGTATGTAACTAAGCGGGAAA
CCCTGGTCCAAGTCTTGCCACCTACACTCTTCACAGGCCCCAGAAATAAATTTATTCCAGATTT
GGTCACACCAACGATGACTGCTGCCTCCGTAGTCCTGGCAAAAAAATCAAGTAAGCTAACAGTT
GTCATCGAAATCCCATAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021