Detail information of BGIOSGA034001_circ_igg.1


General Information
CircRNA Name BGIOSGA034001_circ_igg.1
ID in PlantcircBase osi_circ_009018
Alias Chr11:18639770_18640691(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 13333946-13334698  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA034001_circ_igg.2 BGIOSGA035260_circ_ig.1 BGIOSGA034001_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-AT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGATATCAGTGTTTGGTACCAACTTTTATAACTATCATGTACTAATTCAACATTCTTCAGTC
CTGGAGCACTTTCCCCATGGATTGGGAACCCTTTCAgtgaggcaccatctctcggatttcttct
ccgcttgctcttcgccatgtcaaaatatatcgtgggctatctagcggagtagctttttcgagca
tctgattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGAGGCACCATCTCTCGGATTTCTTCTCCGCTTGCTCTTCGCCATGTCAAAATATATCGTGGG
CTATCTAGCGGAGTAGCTTTTTCGAGCATCTGATTTAGGGTTCATATGTCGAATCAAAGAATTT
GGGGGTTGCTTTTATGCACAAAGGGTTAGGGATTTACTTATCACGAAAATAATTGGTTAAGATT
ATTGTGCGGTTTTTGCCTAGTTGATGGGTTTCTTCACTGGGATTCTAAACTAAACCATGGGTTT
GAGGAACACACGCTCTAATAGTTTTTGTAGTGTAATTAACCTGGATAGGGTAGCACACCAACTG
AAATGCTACTCACTAGCTAGGCTCCAGGAGTCCCTTGTGGATTCTAACTTTTCATACTTGATAT
TCCGTATGCTACAGATTTCGCGTGATATAATTGCTATAGAAAGAGGGGGAAATGCTTGAGGAAT
AGTACATGCTACAAAAAGTTTCAACAGGCTTTACTAGTTTATGAAACATAAGTTGCCAAAGTAC
AACAGAAACCCTGTTTTTTTTTTGTACAAATGGGAAGATTGACAGAAGATTTAATTGATATGTT
TATGATGGCATCCAGGATCAGATGGAGTCATCGATTACCCTTGCGCGGTTTTGAAGCGTTCGGC
CAAAGATGCATCCTGTGATATCAGTGTTTGGTACCAACTTTTATAACTATCATGTACTAATTCA
ACATTCTTCAGTCCTGGAGCACTTTCCCCATGGATTGGGAACCCTTTCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021