Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA001977_circ_g.8 |
ID in PlantcircBase | osi_circ_001948 |
Alias | 1:9261070|9262318 |
Organism | Oryza sativa ssp. indica |
Position | chr1: 9261070-9262318 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA001977 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA001977_circ_g.4 BGIOSGA001977_circ_g.5 BGIOSGA001977_circ_g.6 BGIOSGA001977_circ_g.7 BGIOSGA001977_circ_g.9 BGIOSGA001977_circ_g.10 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA001977-TA:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
9261795-9261072(-) 9261259-9262257(-) 9262139-9261072(+) 9262291-9261136(+) |
Potential amino acid sequence |
MHGQKLFSFEGHEAPVYSICPHHKESIQFIFSTSLDGKIKAWLYDHMGSRVDYDAPGKWCTTML YSADGTRLFSCGTSKDGDSYLVEWNESEGSIKRTYSGFRKKSAGVGVVQFDTAQNHILAAGEDN QIKFWDVDNTTMLSSTEADGGLPSVAKESSISINRVTWSPDGDLIGVAFAKHLIHLHAYQQPNE TRQVLEIDAHSGAVNDIAFSRPNKQLCVVTCGDDRLIKVWDMHGQKLFSFEGHEAPVYSICPHH KESIQFIFSTSLDGKIKAWLYDHMGSRVDYDAPGKWCTTMLYSADGTRLFSCGTSKDGDSYLVE WNESEGSIKRTYSGFRKKSAGVGVVQFDTAQNHILAAGEDNQIKFWDVDNTTMLSSTEADGGLP SVAKESSISINRVTWSPDGDLIGVAFAKHLIHLHAYQQPNETRQVLEIDAHSGAVNDIAFSRPN KQLCVVTCGDDRLIKVWDMHGQKLFSFEGHEAPVYSICPHHKESIQFIFSTSLDGKIKAWLYDH MGSRVDYDAPGKWCTTMLYSADGTRLFSCGTSKDGDSYLVEWNESEGSIKRTYSGFRKKSAGVG VVQFDTAQNHILAAGEDNQIKFWDVDNTTMLSSTEADGGLPSVAKESSISINRVTWSPDGDLIG VAFAKHLIHLHAYQQPNETRQVLEIDAHSGAVNDIAFSRPNKQLCVVTCGDDRLIKVWDMHGQK LFSFEGHEAPVYSICPHHKESIQFIFSTSLDGKIKAWLYDHMGSRVDYDAPGKWCTTMLYSADG TRLFSCGTSKDGDSYLVEWNESEGSIKRTYSGFRKKSAGVGVVQFDTAQNHILAAGEDNQIKFW DVDNTTMLSSTEADGGLP(-) MKVKDLSRGHILGFVKSQLVLVWCSLTQLRITFWLLVKIIRLSSGMLIIQPCLALLKLTEAYRV WLKSLPYPLTGLPGVLMET*(-) MQMNQMFCKCDTYQVSIRTPGNPVNGYGRLFSHTR*(+) MDMEDSLATLGKPPSASVELSMVVLSTSQNLI*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |