Detail information of Os11g0484000_circ_g.8


General Information
CircRNA Name Os11g0484000_circ_g.8
ID in PlantcircBase osa_circ_009371
Alias NA
Organism Oryza sativa
Position chr11: 17037973-17042093  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0484000
Parent gene annotation Class II aldolase/adducin, N-terminal family protein. (Os11t0484
000-01)
Parent gene strand -
Alternative splicing Os11g0484000_circ_g.1 Os11g0484000_circ_g.2 Os11g0484000_circ_g.3 Os11g0484000_circ_g.4 Os11g0484000_circ_g.5 Os11g0484000_circ_g.6 Os11g0484000_circ_g.7 Os11g0484000_circ_g.9 Os11g0484000_circ_g.10 Os11g0484000_circ_g.11 Os11g0484000_circ_g.12 Os11g0484000_circ_g.13 Os11g0484000_circ_g.14 Os11g0484000_circ_g.15 Os11g0484000_circ_g.16 Os11g0484000_circ_g.17 Os11g0484000_circ_g.18
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0484000-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCTTGTTTGGCCATGGCTTTGATACAGGTGAGGAGAGCACCTTCCCATCTGCTGACAGCACAT
ACATGTCCTCTGCCACCATCCTCTCCTTCTGCACACcttcatgccactagcatgccagtgcttt
agcgcctcggggacatcatcgaaaacaactccttgcagttctttactttcaaaaccagtcctcc
atatgtgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCATGCCACTAGCATGCCAGTGCTTTAGCGCCTCGGGGACATCATCGAAAACAACTCCTTGC
AGTTCTTTACTTTCAAAACCAGTCCTCCATATGTGGCCCTGGAATTTGCATTAAAAATGCTGAA
ATCCATCAAAGAAACAGGAATATGCTTGCAGCACCGAAAAAGAATGTGGACTAATCTACCTGGA
GTTGTTTCAACGACGTAATCTTCCTGTCTGCTTTAATCATCGATTCAACATTAGCAACTAATGC
ATTGATAACCTCTTCTTTGTCAGCATCGTCAGGTGGAATTGGAACAGACCCAACAATTCCATTT
TTCAGGTCTTCTTCAACCTGAATAATGAATGCTAATATGTTATATCTTGCATAAAACAGAGATG
GGCACATTCACGTGGCCTAGTGGTAAAACTCATGGTTCTGGTGGTGAGGACTCCAGCCACTTTC
CACCATGGTGGTAAAACAGTTAACTACGTCCACAAATAGGAAGTTGAGGAACCAAAATTGGTAT
GGTAACTTAGATCAAATCTAACAATTCAAAACAAAATAATTTTCACAGGGCTAATCAAATAGTA
TGACTTAAATACCATCGACAAATACTTAGATGGTACAAGCTTGCAGCCTTACAGGATCAACAGC
TTCATGGGATGTGCAAAATTGATTTATCATAACTTACTTGGATGCGCAATAGTTTGATGTCCTC
TTTGGTTTCATCAGAACTATATGTTGAAGTCAGATGCTTTCGCACATTATCACGGGCATAGGGA
AACATCACATCAGTCACAAATGATATTGGAGTAGTTGTTCCCTCAATGTCAAGAACAACACAAT
GCTGCAAGAGAACACAAAGGTTAGCTATTTGTATTCCAGAAACATATTATATGGATGAGTTGAC
CAGATGTAGCAACCACAAAGTTAAGAAAGTACACAAACAATAACACCTAGTACTCACTGCTGCA
AAACGGTACACTATAAGATCTAAAAAAATCATTTAGAAGGTAGATTTTGCAAATACTCAGAACA
AAGAACAGACCTTTGATGATTTGGAATCAGGGCATCCATTTGGAATACTAGAGCTTAGAACACT
GCGTGGTCTTTTGGCACTGTTTATTGGACCATGCTCAGGAGTTGTCCAATCAATACCCAATTGA
TAGAGCTTGATGGCAGCATCAAAAAGGTAATGATAGCATTCAGCCTGAAAAGCACAGGCATAGC
AATTAAGTAAATATATGTCATGGCATAAAGTCCAGGAACCATTATCCCTCACAATGTGTGCATG
ACCACAGTTATATTTAGAGTAAATTGCACAGTTGGTACATGAACTTACAAGGTGGATGCGATTT
AGTACATGCATATGTAAATCGCTCATTTCAGTGCATAAACTTGTCTAATACGTGCAAACTAGAG
CCAAAACAATATGTTGTAACTAATTTCACTAAGTTGAGCACTGATTAGGATGTTATGTAGGCTC
ACATGTCAATATGATGTTACGTAAATATGCATATAGTCAATCAAACATACAATAAGTCATGTTA
ATTATACATAAAGGGAGTATGCAATGGATACGAAATAAATGAAGAACAAGGTTAAATTATTTAC
ACATACGACATATCTCATACCCTCACGTGTGCGCCTGACATTCTATAATCAGACGAACTCAACA
TGAATAGTCACAAGTTTTGGACTAGCACGCACGCTCTAGATAAGTTCATGCACCATAATGAGTA
TTTTACAAGTTTGTGTACTAAATTGCACCCACCTAACAAGTTTATATACCGCCAAAGCGCCAAC
ACAATATACCCTTATATTTATCACAAAACTATTATCAAATAGCAGGCTTGATATAAATATTATT
GAAGTGCATCTAACAGATAGTCATATAATTAATGTATACCCACGACCTAGGTAGTCTTGAAGAT
ATTGATGAACAAGGGCATAGTGTAAGGAGATTACTATTTGATTGTTGAAAGAGCTGACAATCTA
AAATGAAGAAATAAACAAAGTAAAAATGAGAGGTTAGAAAAACATACCTGTGTCTTGGCATTGA
TCCAGGAATCACCCCATACATAAATTCCATGGTTCCGTACAAGGACTGCAGTTGCCTTAGGGTA
TGCTGCAATCTGTTATATATTTTCACATCAGTTCTCTAGATCCATCCAAAATATTCTATTTGTT
CTTTGTTATTTGTTGTTTTGGTCATTAACATAGTCTCCAATACACAGTTTTGATCACTACTTTT
CAATTGTATATAAAAATTATATATCTGTTAATATCATTTCTATGAGTGACGAGCTTACATTGTT
TTGCGCATAGTAGTAAGCTTAAGTTTAAAGGTTTGACTGCAGTAATGTACATAATCCAAAATGA
CATATTGAGAATGGAGGTAATATTGAGAATAACCTCCTCATAATCAACATCAATTTAATAAGTT
TTGTAAGTTAAATCCTAAATGACAGATGAACGAGATGGTTGTAACGATTGCTTCATTGCCTACA
GGTTGGCCAATCCCGTTGTTAGAACAATATCTATTTTATCCACACGAAGTTATGAGAACAACAG
ACTACAAATATAATATTTGTTTTTTTGCGAAGATTGAGAAACTGAAACTCCAAAGAAGGACAAT
AGTAACATACCGCCTCAGCCAGTGAGTCAGTGAGCTCATACTCATAAGGAGTGTTCTCAATTAT
AGGAACCACCAATTCGTCACGGTAACCATGGCCTTTAATTCCTTTAATCATTTCCATATGTGTC
ATCTGTAAGATAGAATAGCAGTATATGGTCAAATAAAGATTTCCATATCACAGTCACTTTAGAG
GTGGATCTACGACTAAAAAAAATCAATCAAATGAGATAATACTATGACTATCATAAGTTCTACT
GACTGAAAACCCTGGCCATATGCAAACAGCAAATAGTTTCTGCTATTAGCTTTGCCTACTACAA
ACACAATGAACAAATTACCAACCTTATTGAAATAGTGGATACATATGATATTTTGGATTTTTCT
GAGTTTGCTTTCGAATTAATTAGCCAATAGAATAGTGTTGGAATAGCACTGATGTCTTGGATAT
GCTAAGCAATATGTGGGGATGGTAAACTTCATGTTTAAATTTAATACTCTCTCTGTCCCTAAAT
ATAAGGGATTTTGGTTGGATGTGACTTATCCTAGTACAACGAATCTGGACAGGCTTTATGTCCA
GATTCGTTGTACTAGAATGTGTCACATCCAACCAAAATCCCTTATATTTAGGGACAGAGGGAGT
ACATTCTAGTATCATGACATCCCGACCAATGTATGCATCGTGCACTTCTCTAAATATTGGAATC
AACAGTGTACCAAATTTAGAAAATATGTATGACATTATTCCAACTGGTCCTGATAGCTGATGCA
TGTCTGTGTGAAATCAATAATCGATCAAATCTTTTAAAAAATGTTCACCACTCTTTTTAGTACA
TATGTAATAATGTCTGCCATGAAATGAAAAACAAATGGAGCAAACATAATCTCCAATTTATTGA
ATAGTGCATCATCTAGAAGGTTAGCACTTAATTGTTAATACCATGGAAGTTCTTGTAATGGAAA
AGTAAGCGGAAATCTAAAAATATGAACAATTATCCATTTTTCAATTTGACACATTAGATCAGAC
AGAAAAATGTCCATAATGTGGTACACTACATGAGAAATGGTGTATTTTCTTAGTACTACCACAT
TTTTGTAAACATCACAGCTAACTTCATGAGAAATATAAAGCAGAACTGGAACATTAGCTAAGAT
TCATGGGGAAAAGAGACAAGTGGGTTCACCCTAAACTCTTTTGCACCAGGATCAAGCATGGTTG
CAATGCAAGTTTCCATCCCATGGCTATGAATAACAGCCCCAGCTCCTCTCATCAGATAAGCCTG
CAAAATACCAATGAAAATTAGACAATTTAGACTAAAACAAGTTGAAGCGGACAAATTAAGCAAA
GGATAGCACTGATAACCTTCATGAACAGAGGAGCACAGTCAGTACATTTTGGAGGCTTGTTTGG
CCATGGCTTTGATACAGGTGAGGAGAGCACCTTCCCATCTGCTGACAGCACATACATGTCCTCT
GCCACCATCCTCTCCTTCTGCACAC
Conservation Information
Conserved circRNAs NA
PMCS 0.215824903
Functional Information
Coding potential Y
Potential coding position 17041962-17037983(+)
17042008-17037999(+)
17042078-17041961(-)
Potential amino acid sequence MNRGAQSVHFGGLFGHGFDTGEESTFPSADSTYMSSATILSFCTPSCH*(+)
MALIQVRRAPSHLLTAHTCPLPPSSPSAHLHATSMPVL*(+)
MVAEDMYVLSADGKVLSSPVSKPWPNKPPKCTDCAPLFMKAYLMRGAGAVIHSHGMETCIATML
DPGAKEFRMTHMEMIKGIKGHGYRDELVVPIIENTPYEYELTDSLAEAIAAYPKATAVLVRNHG
IYVWGDSWINAKTQAECYHYLFDAAIKLYQLGIDWTTPEHGPINSAKRPRSVLSSSIPNGCPDS
KSSKHCVVLDIEGTTTPISFVTDVMFPYARDNVRKHLTSTYSSDETKEDIKLLRIQVEEDLKNG
IVGSVPIPPDDADKEEVINALVANVESMIKADRKITSLKQLQGHIWRTGFESKELQGVVFDDVP
EALKHWHASGMKVCRRRGWWQRTCMCCQQMGRCSPHLYQSHGQTSLQNVLTVLLCS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017