Detail information of BGIOSGA021124_circ_ag.1


General Information
CircRNA Name BGIOSGA021124_circ_ag.1
ID in PlantcircBase osi_circ_016270
Alias Chr06:20308988_20313503(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr6: 20258629-20263144  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA021124_circ_ag.2 BGIOSGA021124_circ_ag.3 BGIOSGA021123_circ_igg.1 BGIOSGA021123_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTGATGTTGTCTAAGGTAAGCCGAGAGTGGGCGACTTCTGTCAGCTTCATGGCTGCCGCTTT
GGGTCCATCTTGCGCTTTCAAAAGAGAAACAGCATCcctcatttcgcatgacatcccaaagccc
atcagtagcaagaaccaggtattccaagccttcatcgaccactttttcctgcatattcatagta
gaatatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCATTTCGCATGACATCCCAAAGCCCATCAGTAGCAAGAACCAGGTATTCCAAGCCTTCATC
GACCACTTTTTCCTGCATATTCATAGTAGAATATCACAAAAGATTCATAAACAATGTTCAACAG
GCTTTTCCATGAACAAGTTTTGTGGCTCATAAGAAATCAGTACTGTGAACAACTTTTCAGAAGG
GTAAAATCATATGCAAGGGAGAAACACATAGCATGTGAATTTTAAATGCTGGATTACATAAGTT
TTCAGGAGTCTCATAGGTTACAACATGTTACTAATTTTTAACTGTTTGATTCAGCGATCAGTGG
TCCAGATCACAGGTGTGATTAAAGTGATTAATCAGGGAAGTCAACATTTCGCACATAGACTGCA
TTTGCAGGCTGTTAAGCACTGCAGCAGACCCATTTCATCCAGGTTGATGATATCTATACTGGCT
ATTTCATGATCCCAAGTGCATAAGAAACGGTGGGTAAGACAAAACCAATACAAAACTGAAGTAC
TGAACTATTAACATGTAAGGGGCAGGGAACCTCTGCAAACTGAACTTCAATAAGATACCTGAAT
GTTTGGTTCTGCTTTAACATAGCGCTTCATTAAACGATTGCCAAATGCACGGGACACTGCCAGA
ATTCCATCAACCCTCCATATATCTGTTGTGACATGATCAAACTTTTCAGGTTTTCATTCTTACT
CGTATTCGATTAAATTAAAGCTGGCTAAATACATTAGGAGTATTCTGATAGTTAAAAGTGCTTA
CCATCTGAAACAACAATGCCTCCAGCATCCTCAATTCTCTTTCGCTCATCTTTTTTGTTAGGTT
TGTGATCTTCAGACAGTGGGACAGCTAAAAAGCATGGAAATAAACAAGATTGAAATGTAAGAAC
AAAAAAGAGAATTCCACAGTATCTAGAGTATTTGGAACGTGCCAATTTCTGAAAATGGTATAGA
AACATATCAAAATTGGTGCAATTTGATAAAAACTACTAGAGACAAGATCCTTCGCAACACAGGA
AAAAAAAGAAACACTTAATTTTCAGTTGACAAAGAGGTTTCAGGGCATACTGAAAAGTAACCAT
TTATAGCTACAACAATATGGCAACTTGAATGGGAGTTTCTTCACTAACAAAGAAACACAACCAA
TAAAATATTACCTTTTCCGGCTTTTAGAGCAACGGCACGTGAATCACCAACATTAGCTACATAT
AGGCGGTTGCCAATCAAAATGGCAGCCACTGCTGTTGAACCATCATCCCTATAACGATCAGAAG
ATATCGACTGTAGGAAATCAGCGTCAGTTTTCAGAAACGTTTGGTCTGCATTTTGCAAAAGCAG
TTAACGAAATGAGAACATTATTACTTTCTGGCTCTGAATCAGAACATACAGAAGAGGTACAGCC
GAAATGAAGGGGAAAAAACATTACTTATAGCGAGCTTTGTGTCTTTCAGGAACTTAGGATGCTT
CACGAGGTTTTTAAATAGATGTTTCTTCAGATATTCAGCAGCACGTGGTCCTCCATGACCTAAT
GTATGCAATCTTCAGACAAAGATATGATAGGGAACAAAATTACTAGTGCAACTTAATGAAAGAA
AAGATTGAATACACTACCATCAAATACACCAAATAAGCTGACTGTTTCTCCGTTGACCGTGGTT
GACTTTATGCTCAAGCGATCCTCCATAGAAGGCCTCCTCCCCTGGAAACTTGAATATCCCCAGC
TCAATTTACCATCCTTACTGCCAAAAAAAAAAGTATTTGATATCATGTCCTCTCAATTCTCAAA
TCTCTAATAGAAGGATTATAAGTAGAGAAATTCGAAGGAATTCTGAAATTGCACAGATAAGCCA
ATTTCAACTGGGCAGCAGGTAAAATACACACCTACAGCCAACTCCATCGCCGTCAAATCTCGAC
CTCGGCGGCTGCCGCTTCGAGTTCCGCCCCCTCCGGCCTCCCCTCGAGGCAGCCGGTCCGCGTG
AGGATGCCTCGCCTTCGTCGCCGATGCTGACGCCGAGGAGGAGCGAGTAGAGCTCGACCTCGTC
GTCGCCCAGGCCCTTCGAAGCAGCTCCGGCGCCGCCGCGCGAGGAGAAGAAGCGGGGGGCGGAG
CCGCCATTCCGCAGCGGGCCAGGGGCATGGAGACTGGGGTGTGGGCCCGCGCGGCTGGAGGCGG
CGGACGTCGACGAAGCCGCGGCGCGGCGGAGGAGGCCGAGGAGGTGGTGGCGCCGCATGGCGGA
GGCGGAGGCGGAGGCGGAGACAGCGGCCCTGGGTTTAGGTTTTTAACGATTTTTCTTTTTGCAA
CCGCTAAACAACTGTCGCAAAAGTTCCCTTCAAAAATTTTTTTTTGGGAGTTTTAGAACTTTTT
TTTAAAAAAAATTAAAAATATAACTATTATGAAACATATTTTATTGTGGACGATGTTTCCTACT
AAGACAATGGACACTCTCAACGAATGGATCCTCCACGTGCTACACTAGTCATATATCAAAGTTC
TTCCGTGCGTCTTTATCATGGCGGTAGAGACTTTTTTGTTTTTGGTTGGACGATTCCATAAATA
GAATAAAAAGATAAATAAGATCAAGTAGAACCAGTAAGTATGAGTGGAAAACTTACTATAGAAA
GAAGCTTACGCCAGAAGAAACCAAAAGATATCTTATCACGGAAGGAAGCTTGCAGCGTAAGCCA
GCAACTTGTAGTGGAAGCCAAAAGTTAGCTTTTAGGAGAACCCAGCTTACACTGTAAATCATCA
GCTTTCTCCGCCTATAAATAGGACCCTCAAGGTTAAGGCGAGATAGATCTCTTTGGAGCACCTC
GACTCTCCTTATGTAGATTGTAATCAATTTCAAAAGAAATAAGGCTTTCACTCGCTTATAATTT
CTGTGGTCTACAGCTCTGTGTTCATCTGTTTGCGTGCTGATCAGTAGAATAAAAACTACAGTTA
TGGTGTTTACTATAATATAATTATACAACATATATTTTAATTAAATTGTAACTAAATTGTAGTT
ATAATATAATTACCCTACAACTATATTTTAATTATATTTTCCCCTCTGTATAACTTAGGTATAA
AGCTACATATATTTTTTTATACAACTTATCTTATTATAATATATAGTTATGGTGAAATTACATC
ATACTATAGTTAGATTTGATTTTTTTTCACTCAAAAAACTTGTGGTAGTTTTTAGATAGTCCTT
TTTTGATTTTTTTTTAATAAATCATTTTGGATATTTTGCATTATCATATCGTTGAAGCAAAGTT
CAAAACAAAAGAAAGAGTCTTGATTTAGAGCAGCTTAAATTGCTTGGGCAGTGTAAGCCGTTAC
GAACATACTTACCATTAAAAAAAGTAAAACCCGTAAAAACCAGACCTAGAAGTTCTCTAAATTA
ATAAAAAAATTAATTTAATAAAAAAAATACTACAGAGATCAGTATAATATGAAATAATTCCCAC
CAAATCTTAAGTCTAAGCTCAACTTTATTCTAAAGAATAAAAAATCAGGTTAATAGTATAAGTT
TGAGGTTTGGTGAGAATGTATTCATATCAATACCTATCTCTAGTATTTTTTCATGAAATTATAA
AACTTTTTATGTTCAACTTTCACGTGTTTTCACAGGACATATACCCTACTTACATAAGCAGAAG
TGCAAAAGAGATAATTTTTTTCTTTTCAAAATAAATATTGATTTTTCCTTTCAAAATAAATATT
GATTTTTTTCCTTTCAAAATAAAGGTTCTTCATGTGAAACATGAGTTTTGAAGAAGAAAGAGCT
TCGCAATCGTGATTATAAGCTTGCGATGCTTGCTGCTGCTGCTAGCAAATAGGCATGAAAAATC
GAAAACGATATTATTTTTTATTAGTTTTTAAAAAAGGTAACGGTCAGGAATTTAGTTTTTATAT
TAATAAAATTAAATATTTAGTGATAATTTTAATATGACGTATAGAGAAATTAAAAAAAAATTAC
AGAAGAAATAATATTATTTTTTTTGCAAAAATGATATTGGTATGATAGAAAAAATTATATACGG
TTTTCATCCCTATTAGCGACGCCGGGATTTGGCAAACAATAACTAATGAAGTATATAGGCACAG
ACATTAAATCATTAGCCACCTAAAAAATTTAGAACATTTCTTATGCTATAGATAACTTAATATT
TCAGGGCCGGCTACCCCTAATAGCAAGAGATCCGAAACCGAAATCAAACAACCATAAGACGTTT
CGCTAGTAAACTGTGCACGTCAGATTTAAAAGCTTCCTACATGACGAAAAAAACGACTCAACCA
ATCTAGTAATAATCTTGTAGAACCGCGGATCAGGGGACCAACTCTCGTTTCAAGATATCTGGTG
ACAAAACTTTGTTAACATCAGTTGCTGTTGGTTGATTTTCCATGGTGAAACTGCAGCACGATGC
ATGTGATGTTGTCTAAGGTAAGCCGAGAGTGGGCGACTTCTGTCAGCTTCATGGCTGCCGCTTT
GGGTCCATCTTGCGCTTTCAAAAGAGAAACAGCATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021