Detail information of BGIOSGA021124_circ_ag.2


General Information
CircRNA Name BGIOSGA021124_circ_ag.2
ID in PlantcircBase osi_circ_016271
Alias Chr06:20042247_20046628(MH63RS2), Chr06:20310150_20314534(ZS97RS2), Chr06:20042247_20046628(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 20259791-20264175  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2, CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA021124_circ_ag.1 BGIOSGA021124_circ_ag.3 BGIOSGA021123_circ_igg.1 BGIOSGA021123_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAAAGGGCTTACCATCGAAAACAACAATACCTCCGGCATCCTCAATTCTCTTCTGCTCATCTT
TTCTGTTAGGTTTATGATCTTCTGACAGTGGGACAGccttttccggcttttagagcaacggcac
gtgaatcaccaacattagctacatataggcggttgccaatcaaaatggcagccactgctgttga
accatcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTTCCGGCTTTTAGAGCAACGGCACGTGAATCACCAACATTAGCTACATATAGGCGGTTGC
CAATCAAAATGGCAGCCACTGCTGTTGAACCATCATCCCTATAACGATCAGAAGATATCGACTG
TAGGAAATCAGCGTCAGTTTTCAGAAACGTTTGGTCTGCATTTTGCAAAAGCAGTTAACGAAAT
GAGAACATTATTACTTTCTGGCTCTGAATCAGAACATACAGAAGAGGTACAGCCGAAATGAAGG
GGAAAAAACATTACTTATAGCGAGCTTTGTGTCTTTCAGGAACTTAGGATGCTTCACGAGGTTT
TTAAATAGATGTTTCTTCAGATATTCAGCAGCACGTGGTCCTCCATGACCTAATGTATGCAATC
TTCAGACAAAGATATGATAGGGAACAAAATTACTAGTGCAACTTAATGAAAGAAAAGATTGAAT
ACACTACCATCAAATACACCAAATAAGCTGACTGTTTCTCCGTTGACCGTGGTTGACTTTATGC
TCAAGCGATCCTCCATAGAAGGCCTCCTCCCCTGGAAACTTGAATATCCCCAGCTCAATTTACC
ATCCTTACTGCCAAAAAAAAAAGTATTTGATATCATGTCCTCTCAATTCTCAAATCTCTAATAG
AAGGATTATAAGTAGAGAAATTCGAAGGAATTCTGAAATTGCACAGATAAGCCAATTTCAACTG
GGCAGCAGGTAAAATACACACCTACAGCCAACTCCATCGCCGTCAAATCTCGACCTCGGCGGCT
GCCGCTTCGAGTTCCGCCCCCTCCGGCCTCCCCTCGAGGCAGCCGGTCCGCGTGAGGATGCCTC
GCCTTCGTCGCCGATGCTGACGCCGAGGAGGAGCGAGTAGAGCTCGACCTCGTCGTCGCCCAGG
CCCTTCGAAGCAGCTCCGGCGCCGCCGCGCGAGGAGAAGAAGCGGGGGGCGGAGCCGCCATTCC
GCAGCGGGCCAGGGGCATGGAGACTGGGGTGTGGGCCCGCGCGGCTGGAGGCGGCGGACGTCGA
CGAAGCCGCGGCGCGGCGGAGGAGGCCGAGGAGGTGGTGGCGCCGCATGGCGGAGGCGGAGGCG
GAGGCGGAGACAGCGGCCCTGGGTTTAGGTTTTTAACGATTTTTCTTTTTGCAACCGCTAAACA
ACTGTCGCAAAAGTTCCCTTCAAAAATTTTTTTTTGGGAGTTTTAGAACTTTTTTTTAAAAAAA
ATTAAAAATATAACTATTATGAAACATATTTTATTGTGGACGATGTTTCCTACTAAGACAATGG
ACACTCTCAACGAATGGATCCTCCACGTGCTACACTAGTCATATATCAAAGTTCTTCCGTGCGT
CTTTATCATGGCGGTAGAGACTTTTTTGTTTTTGGTTGGACGATTCCATAAATAGAATAAAAAG
ATAAATAAGATCAAGTAGAACCAGTAAGTATGAGTGGAAAACTTACTATAGAAAGAAGCTTACG
CCAGAAGAAACCAAAAGATATCTTATCACGGAAGGAAGCTTGCAGCGTAAGCCAGCAACTTGTA
GTGGAAGCCAAAAGTTAGCTTTTAGGAGAACCCAGCTTACACTGTAAATCATCAGCTTTCTCCG
CCTATAAATAGGACCCTCAAGGTTAAGGCGAGATAGATCTCTTTGGAGCACCTCGACTCTCCTT
ATGTAGATTGTAATCAATTTCAAAAGAAATAAGGCTTTCACTCGCTTATAATTTCTGTGGTCTA
CAGCTCTGTGTTCATCTGTTTGCGTGCTGATCAGTAGAATAAAAACTACAGTTATGGTGTTTAC
TATAATATAATTATACAACATATATTTTAATTAAATTGTAACTAAATTGTAGTTATAATATAAT
TACCCTACAACTATATTTTAATTATATTTTCCCCTCTGTATAACTTAGGTATAAAGCTACATAT
ATTTTTTTATACAACTTATCTTATTATAATATATAGTTATGGTGAAATTACATCATACTATAGT
TAGATTTGATTTTTTTTCACTCAAAAAACTTGTGGTAGTTTTTAGATAGTCCTTTTTTGATTTT
TTTTTAATAAATCATTTTGGATATTTTGCATTATCATATCGTTGAAGCAAAGTTCAAAACAAAA
GAAAGAGTCTTGATTTAGAGCAGCTTAAATTGCTTGGGCAGTGTAAGCCGTTACGAACATACTT
ACCATTAAAAAAAGTAAAACCCGTAAAAACCAGACCTAGAAGTTCTCTAAATTAATAAAAAAAT
TAATTTAATAAAAAAAATACTACAGAGATCAGTATAATATGAAATAATTCCCACCAAATCTTAA
GTCTAAGCTCAACTTTATTCTAAAGAATAAAAAATCAGGTTAATAGTATAAGTTTGAGGTTTGG
TGAGAATGTATTCATATCAATACCTATCTCTAGTATTTTTTCATGAAATTATAAAACTTTTTAT
GTTCAACTTTCACGTGTTTTCACAGGACATATACCCTACTTACATAAGCAGAAGTGCAAAAGAG
ATAATTTTTTTCTTTTCAAAATAAATATTGATTTTTCCTTTCAAAATAAATATTGATTTTTTTC
CTTTCAAAATAAAGGTTCTTCATGTGAAACATGAGTTTTGAAGAAGAAAGAGCTTCGCAATCGT
GATTATAAGCTTGCGATGCTTGCTGCTGCTGCTAGCAAATAGGCATGAAAAATCGAAAACGATA
TTATTTTTTATTAGTTTTTAAAAAAGGTAACGGTCAGGAATTTAGTTTTTATATTAATAAAATT
AAATATTTAGTGATAATTTTAATATGACGTATAGAGAAATTAAAAAAAAATTACAGAAGAAATA
ATATTATTTTTTTTGCAAAAATGATATTGGTATGATAGAAAAAATTATATACGGTTTTCATCCC
TATTAGCGACGCCGGGATTTGGCAAACAATAACTAATGAAGTATATAGGCACAGACATTAAATC
ATTAGCCACCTAAAAAATTTAGAACATTTCTTATGCTATAGATAACTTAATATTTCAGGGCCGG
CTACCCCTAATAGCAAGAGATCCGAAACCGAAATCAAACAACCATAAGACGTTTCGCTAGTAAA
CTGTGCACGTCAGATTTAAAAGCTTCCTACATGACGAAAAAAACGACTCAACCAATCTAGTAAT
AATCTTGTAGAACCGCGGATCAGGGGACCAACTCTCGTTTCAAGATATCTGGTGACAAAACTTT
GTTAACATCAGTTGCTGTTGGTTGATTTTCCATGGTGAAACTGCAGCACGATGCATGTGATGTT
GTCTAAGGTAAGCCGAGAGTGGGCGACTTCTGTCAGCTTCATGGCTGCCGCTTTGGGTCCATCT
TGCGCTTTCAAAAGAGAAACAGCATCCTTGTTGACAAAAGATGGAAAATGCTAGTTAGCATTGG
ACCGAATGAGATACGCGCTCGCACGAGGGCAAAGCTGTGTGTCAGGGGTGAACATAGTGGATGT
CATTCATTGGTTTTCATGTAAGCAGATATTTCTGCTGTTTTTTTCTAGGTCGCATAATCAACAA
ACAGGGATTCAACAAATGATACCTCATTTCGCATAACATCCCAAAGGCCATCAGTAGCAAGAAT
CAGGTATTCCAAGCTTTCATCGACCACTTTGTCCTGCATATTTACAGTAAAACATCACAAAAGA
TTCATAGGTGATGTTCAATAGGCTTTTCCATTAACAGGTTTTGTGGCATATAAGGAATCAGTGC
GTGAACAATTAAGTAGAAGGATAGGATCATATGCAAAGGAGGAACATGTAGCAGGAGAATTTGA
AATGCTGAATTACATGGGTTTTCTCATGACCAATCAGGAACATCGACATTCCCAGATCACAGGT
GAGATTAAAGTGATCAATCAGGAACATCAACATTTCCCAGATAGACTGCACTTGCAGGCTGTTT
AGCATTGCAGCAGATCCATTTCATTCAGGTTGATGATGTGTACAGACTATTTCATGATACCCAA
GTGCATATGAAATGGGTATTATGGTTTAGTAAGACAAAACCAGTACAGAAAAGCTGGTCCTTGT
CCACATAAAAATGTAAACATGCAAGGGGCGGGGATCCAGTGCAAAAAACTAAACTTTAAAAAGA
TACCTGAATATCTGGTTCTGCTTTCACATAGTGCTTCAATGCACGGTTGCCAAATGCACGGGAC
ATTGCCAAAAGTCCATTAACCCTCCATGTATCTGCTTCGACATGATCAAACTTCTCAAGTTTTC
ATTCATACTTCCTATTAGATTAAGCTAAAGCTGGCCAAATACATCAGGAGGATTTTCATGATTA
AAGGGCTTACCATCGAAAACAACAATACCTCCGGCATCCTCAATTCTCTTCTGCTCATCTTTTC
TGTTAGGTTTATGATCTTCTGACAGTGGGACAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021