Detail information of AT2G03530_circ_g.4


General Information
CircRNA Name AT2G03530_circ_g.4
ID in PlantcircBase ath_circ_012688
Alias At_ciR308, Ath_circ_FC1154, AT2G03530_C1
Organism Arabidpsis thaliana
Position chr2: 1072474-1072845  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, MapSplice, PcircRNA_finder, circRNA_finder, find_circ, CIRI-full, CIRI2
Parent gene AT2G03530
Parent gene annotation ureide permease 2
Parent gene strand +
Alternative splicing AT2G03530_circ_g.1 AT2G03530_circ_g.2 AT2G03530_circ_g.3 AT2G03530_circ_g.5 AT2G03530_circ_g.6
Support reads 35/4
Tissues leaf/aerial, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03530.1:2
AT2G03530.3:2
AT2G03530.4:2
AT2G03530.5:2
AT2G03530.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAAACTCATCAAAAGACCTGGAGACTAATGTTACGACAAAACCTAAAGAAGGGACAGCAAGA
TTTCTTATAGAGCTTGAGAACACAAGAGCCATAAAGgctcaaccttgaactatttcttggatga
taagatcaacaaagccgagatccttttccccggtgtggcctgtttcttgatcgcggtttgtctt
ggttcagc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 293
Transcript exons: 1072474-1072639,1072719-1072845
GCTCAACCTTGAACTATTTCTTGGATGATAAGATCAACAAAGCCGAGATCCTTTTCCCCGGTGT
GGCCTGTTTCTTGATCGCGGTTTGTCTTGGTTCAGCAGTTCATAGATCCAATGCAGACGATAAC
AAGGCCAAGCTAAGAGACTTTGAAACGGCTAAGCAAGAAGCTTCAGGTCCATCTACCGAAATAG
GAACAAACTCATCAAAAGACCTGGAGACTAATGTTACGACAAAACCTAAAGAAGGGACAGCAAG
ATTTCTTATAGAGCTTGAGAACACAAGAGCCATAAAG

Genomic sequence GCTCAACCTTGAACTATTTCTTGGATGATAAGATCAACAAAGCCGAGATCCTTTTCCCCGGTGT
GGCCTGTTTCTTGATCGCGGTTTGTCTTGGTTCAGCAGTTCATAGATCCAATGCAGACGATAAC
AAGGCCAAGCTAAGAGACTTTGAAACGGCTAAGCAAGAGTAATCAAGATTCAGTCTCTCACTTT
ATTTTCCTAAACAATCTGTTTTCTTACTAATATCCCAATCTTGTCTCATCCAGAGCTTCAGGTC
CATCTACCGAAATAGGAACAAACTCATCAAAAGACCTGGAGACTAATGTTACGACAAAACCTAA
AGAAGGGACAGCAAGATTTCTTATAGAGCTTGAGAACACAAGAGCCATAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.384961836
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress