Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G03530_circ_g.4 |
ID in PlantcircBase | ath_circ_012688 |
Alias | At_ciR308, Ath_circ_FC1154, AT2G03530_C1 |
Organism | Arabidpsis thaliana |
Position | chr2: 1072474-1072845 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, MapSplice, PcircRNA_finder, circRNA_finder, find_circ, CIRI-full, CIRI2 |
Parent gene | AT2G03530 |
Parent gene annotation |
ureide permease 2 |
Parent gene strand | + |
Alternative splicing | AT2G03530_circ_g.1 AT2G03530_circ_g.2 AT2G03530_circ_g.3 AT2G03530_circ_g.5 AT2G03530_circ_g.6 |
Support reads | 35/4 |
Tissues | leaf/aerial, whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT2G03530.1:2 AT2G03530.3:2 AT2G03530.4:2 AT2G03530.5:2 AT2G03530.2:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.384961836 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017;Chen et al., 2017a;Liu et al., 2017;Zhang et al., 2019 |