Detail information of AT2G03530_circ_g.6


General Information
CircRNA Name AT2G03530_circ_g.6
ID in PlantcircBase ath_circ_012690
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1072719-1072845  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G03530
Parent gene annotation ureide permease 2
Parent gene strand +
Alternative splicing AT2G03530_circ_g.1 AT2G03530_circ_g.2 AT2G03530_circ_g.3 AT2G03530_circ_g.4 AT2G03530_circ_g.5
Support reads 1
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03530.1:1
AT2G03530.2:1
AT2G03530.5:1
AT2G03530.3:1
AT2G03530.4:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAAAACCTAAAGAAGGGACAGCAAGATTTCTTATAGAGCTTGAGAACACAAGAGCCATAAAGa
gcttcaggtccatctaccgaaataggaacaaactcatcaaaagacctggagactaatgttacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGCTTCAGGTCCATCTACCGAAATAGGAACAAACTCATCAAAAGACCTGGAGACTAATGTTACG
ACAAAACCTAAAGAAGGGACAGCAAGATTTCTTATAGAGCTTGAGAACACAAGAGCCATAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.249784682
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017